Variant report

Variant	rs4687933
Chromosome Location	chr3:118404204-118404205
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1081905	1.00[AMR][1000 genomes]
rs1081918	1.00[AMR][1000 genomes]
rs1353937	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1392343	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1995256	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2173626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3021393	1.00[AMR][1000 genomes]
rs3920077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4261874	1.00[AMR][1000 genomes]
rs4596141	1.00[AMR][1000 genomes]
rs4687928	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57102518	1.00[AMR][1000 genomes]
rs6438464	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438465	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438466	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438467	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791688	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616535	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616543	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638735	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs798570	1.00[AMR][1000 genomes]
rs798573	1.00[AMR][1000 genomes]
rs924426	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847292	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847418	0.91[AFR][1000 genomes]
rs9875572	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829691	chr3:118393966-118560755	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118399400-118404600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:118401400-118405600	Weak transcription	GM12878-XiMat	blood
3	chr3:118403000-118406000	Weak transcription	Fetal Lung	lung
4	chr3:118404000-118404800	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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