Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10508559	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828308	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828310	1.00[EUR][1000 genomes]
rs10828326	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11012974	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013004	1.00[EUR][1000 genomes]
rs11013005	1.00[EUR][1000 genomes]
rs11013023	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013024	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013037	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013073	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11013076	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11013081	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013089	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11013119	1.00[EUR][1000 genomes]
rs11013134	1.00[EUR][1000 genomes]
rs11013147	1.00[EUR][1000 genomes]
rs12218657	1.00[EUR][1000 genomes]
rs12219357	1.00[EUR][1000 genomes]
rs12354884	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12355606	1.00[EUR][1000 genomes]
rs12358313	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12359226	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12359455	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12359899	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16917080	1.00[EUR][1000 genomes]
rs17680760	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3416896	chr10:18508246-18510294	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
2	esv3339607	chr10:18508696-18509794	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18499200-18511000	Weak transcription	Aorta	Aorta
2	chr10:18502400-18513600	Weak transcription	Right Ventricle	heart
3	chr10:18504400-18510400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:18504800-18513400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:18505400-18513400	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:18506000-18512800	Weak transcription	Fetal Lung	lung
7	chr10:18506200-18513600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:18506800-18513600	Weak transcription	Pancreas	Pancrea
9	chr10:18507000-18513600	Weak transcription	Ovary	ovary
10	chr10:18508400-18510000	Enhancers	Left Ventricle	heart
11	chr10:18508600-18511800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:18508600-18513000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr10:18508800-18511800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:18508800-18512400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:18508800-18513200	Weak transcription	Brain Anterior Caudate	brain
16	chr10:18509600-18509800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr10:18509600-18510200	Enhancers	Stomach Smooth Muscle	stomach
18	chr10:18509600-18511400	Enhancers	Fetal Heart	heart

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