Variant report

Variant	rs10828308
Chromosome Location	chr10:18494876-18494877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10508559	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828321	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828326	1.00[EUR][1000 genomes]
rs11012974	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013004	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013005	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs11013023	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11013037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11013073	1.00[EUR][1000 genomes]
rs11013076	1.00[EUR][1000 genomes]
rs11013081	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013089	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013119	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013134	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013147	1.00[EUR][1000 genomes]
rs12146379	1.00[CEU][hapmap]
rs12218657	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12219357	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12354884	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12355606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12358313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12359226	1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12359455	1.00[EUR][1000 genomes]
rs12359899	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16917080	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17679683	1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs17680760	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:18486800-18502000	Weak transcription	Fetal Stomach	stomach
3	chr10:18493200-18497800	Weak transcription	Fetal Heart	heart
4	chr10:18493600-18495800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:18493800-18497600	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:18493800-18503800	Weak transcription	Fetal Brain Male	brain
7	chr10:18494000-18495200	Enhancers	Stomach Smooth Muscle	stomach
8	chr10:18494000-18497600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:18494200-18497800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:18494200-18499600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:18494400-18503600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:18494600-18495000	Enhancers	NHLF	lung
13	chr10:18494800-18495000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:18494800-18497800	Weak transcription	Rectal Smooth Muscle	rectum

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