Variant report

Variant	rs11013037
Chromosome Location	chr10:18503928-18503929
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18392878..18393854-chr10:18503287..18504544,6	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10508559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10828310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828321	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828326	1.00[EUR][1000 genomes]
rs11012974	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013004	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11013005	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013023	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11013024	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013073	1.00[EUR][1000 genomes]
rs11013076	1.00[EUR][1000 genomes]
rs11013081	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013089	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013119	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013134	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013147	1.00[EUR][1000 genomes]
rs12146379	1.00[CEU][hapmap]
rs12218657	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12219357	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12354884	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12355606	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12358313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12359226	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12359455	1.00[EUR][1000 genomes]
rs12359899	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16917080	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17679683	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs17680760	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3469840	chr10:18501971-18504819	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3346215	chr10:18502321-18504569	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3468729	chr10:18502796-18504044	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv17952	chr10:18503647-18504164	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18499200-18511000	Weak transcription	Aorta	Aorta
2	chr10:18500000-18504800	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:18500200-18506000	Weak transcription	Right Atrium	heart
4	chr10:18502000-18504400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:18502400-18513600	Weak transcription	Right Ventricle	heart
6	chr10:18502800-18505400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:18503400-18504800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:18503400-18505800	Enhancers	Fetal Heart	heart
9	chr10:18503600-18504000	Flanking Active TSS	Colon Smooth Muscle	Colon
10	chr10:18503600-18504400	Enhancers	Brain Angular Gyrus	brain
11	chr10:18503600-18504400	Enhancers	Brain Anterior Caudate	brain
12	chr10:18503600-18504400	Enhancers	Brain Hippocampus Middle	brain
13	chr10:18503600-18504400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:18503600-18504400	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr10:18503600-18504400	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr10:18503600-18504600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:18503600-18505000	Enhancers	Ovary	ovary
18	chr10:18503600-18505400	Enhancers	Fetal Stomach	stomach
19	chr10:18503800-18504000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:18503800-18504000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:18503800-18504000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:18503800-18504200	Weak transcription	Left Ventricle	heart
23	chr10:18503800-18504200	Weak transcription	Pancreas	Pancrea
24	chr10:18503800-18504400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:18503800-18504400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr10:18503800-18504400	Enhancers	Fetal Brain Male	brain
27	chr10:18503800-18504800	Enhancers	Fetal Lung	lung

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