Variant report

Variant	rs17680760
Chromosome Location	chr10:18518619-18518620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10508559	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10828308	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10828310	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10828321	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11012974	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013004	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013005	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013023	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013024	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013037	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013076	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013081	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013119	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11013134	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11013147	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12146379	1.00[CEU][hapmap]
rs12218657	1.00[EUR][1000 genomes]
rs12219357	1.00[EUR][1000 genomes]
rs12354884	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355606	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12358313	1.00[EUR][1000 genomes]
rs12359226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12359899	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16917080	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18511200-18520400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:18514000-18518800	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:18514000-18522400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:18514000-18522800	Weak transcription	Esophagus	oesophagus
5	chr10:18514400-18524400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:18514400-18525600	Weak transcription	Fetal Lung	lung
7	chr10:18514400-18526600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:18514600-18519000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:18515400-18522000	Weak transcription	Ovary	ovary
10	chr10:18515800-18532000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:18516800-18524800	Weak transcription	Fetal Stomach	stomach
12	chr10:18517000-18518800	Weak transcription	Fetal Heart	heart
13	chr10:18517600-18518800	Weak transcription	HSMM	muscle
14	chr10:18517600-18520000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:18517800-18519800	Enhancers	HSMMtube	muscle
16	chr10:18518000-18521000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:18518000-18521000	Enhancers	Osteobl	bone
18	chr10:18518200-18519200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:18518200-18520000	Enhancers	NH-A	brain
20	chr10:18518200-18520800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:18518200-18520800	Enhancers	NHDF-Ad	bronchial
22	chr10:18518400-18519200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:18518400-18519200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:18518400-18520800	Enhancers	NHLF	lung

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