Variant report

Variant	rs11012974
Chromosome Location	chr10:18489049-18489050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10508559	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828308	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828310	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828321	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828326	1.00[EUR][1000 genomes]
rs11013004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013005	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013023	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013024	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11013037	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013073	1.00[EUR][1000 genomes]
rs11013076	1.00[EUR][1000 genomes]
rs11013081	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013089	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013119	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013134	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11013147	1.00[EUR][1000 genomes]
rs12146379	1.00[CEU][hapmap]
rs12218657	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12219357	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12354884	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12355606	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12358313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12359226	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12359455	1.00[EUR][1000 genomes]
rs12359899	1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16917080	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17679683	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17680760	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039174	chr10:18474463-18493676	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:18481800-18490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:18485000-18503800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:18486600-18491000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:18486600-18491000	Weak transcription	Fetal Heart	heart
7	chr10:18486600-18491200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:18486600-18491600	Weak transcription	Aorta	Aorta
9	chr10:18486600-18491800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:18486600-18492200	Weak transcription	Fetal Intestine Large	intestine
11	chr10:18486800-18491200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:18486800-18491200	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:18486800-18492000	Weak transcription	Left Ventricle	heart
14	chr10:18486800-18502000	Weak transcription	Fetal Stomach	stomach
15	chr10:18487600-18491200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:18487800-18491000	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links