Variant report

Variant	rs10828459
Chromosome Location	chr10:23746371-23746372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23744620..23747012-chr10:23752553..23755040,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10734047	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10741027	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10741028	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10741029	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013499	0.94[EUR][1000 genomes]
rs11013500	0.94[EUR][1000 genomes]
rs11013502	0.91[EUR][1000 genomes]
rs11013507	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013514	0.90[EUR][1000 genomes]
rs12246098	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12250542	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12358270	0.94[EUR][1000 genomes]
rs12767397	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12780687	0.92[EUR][1000 genomes]
rs1473079	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1546521	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16923263	0.92[EUR][1000 genomes]
rs1877324	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2036922	0.92[EUR][1000 genomes]
rs2055920	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2055921	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2055922	0.89[EUR][1000 genomes]
rs2055923	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2175500	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2175501	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2366162	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35065452	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35256322	0.92[EUR][1000 genomes]
rs4325223	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4427471	0.91[EUR][1000 genomes]
rs4500392	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4747477	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4747478	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4748888	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4748892	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4748893	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4748894	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4748896	0.87[ASN][1000 genomes]
rs4748897	0.92[ASN][1000 genomes]
rs4748898	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4748902	0.82[ASN][1000 genomes]
rs6415970	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6482278	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6482279	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482280	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482285	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6482286	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7079051	0.92[EUR][1000 genomes]
rs7079567	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7082637	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7083824	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7083923	0.82[AMR][1000 genomes]
rs7085009	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7085999	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7089300	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7893165	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7903159	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7909037	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7911376	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7913300	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7917515	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7918459	0.92[EUR][1000 genomes]
rs7923271	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs907451	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs956007	0.80[EUR][1000 genomes]
rs962705	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23731600-23750600	Weak transcription	HSMMtube	muscle
2	chr10:23731800-23747800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:23732200-23747800	Weak transcription	NHEK	skin
4	chr10:23732600-23750400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:23738200-23749400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:23739000-23750800	Weak transcription	Aorta	Aorta
7	chr10:23741400-23746600	Weak transcription	Psoas Muscle	Psoas
8	chr10:23741400-23748800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:23741400-23751800	Weak transcription	Right Atrium	heart
10	chr10:23742400-23750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:23744200-23746600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:23745200-23748000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:23745600-23746600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:23745600-23746800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:23745800-23746600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:23745800-23746800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:23745800-23747000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:23745800-23747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:23746000-23746400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:23746000-23748600	Enhancers	Primary B cells from cord blood	blood
21	chr10:23746200-23749200	Enhancers	Primary B cells from peripheral blood	blood

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