Variant report

Variant	rs956007
Chromosome Location	chr10:23721412-23721413
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23720439..23723434-chr10:23726111..23729992,4	MCF-7	breast:
2	chr10:23719313..23724177-chr10:23725494..23728219,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10734047	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs10741027	0.82[EUR][1000 genomes]
rs10741028	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs10741029	0.80[EUR][1000 genomes]
rs10828459	0.80[EUR][1000 genomes]
rs11013470	0.88[AMR][1000 genomes]
rs11013499	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11013500	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11013502	0.83[EUR][1000 genomes]
rs11013514	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11013520	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs12246098	0.80[EUR][1000 genomes]
rs12250542	0.80[EUR][1000 genomes]
rs12358270	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12780687	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1473079	0.80[EUR][1000 genomes]
rs16923263	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2036922	0.85[EUR][1000 genomes]
rs2055922	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35065452	0.82[EUR][1000 genomes]
rs35256322	0.88[EUR][1000 genomes]
rs4333914	0.86[JPT][hapmap];0.80[MEX][hapmap];0.82[AMR][1000 genomes]
rs4427471	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4500392	0.80[EUR][1000 genomes]
rs4748888	0.84[EUR][1000 genomes]
rs4748892	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs4748893	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs4748894	0.80[EUR][1000 genomes]
rs6415970	0.82[EUR][1000 genomes]
rs6482278	0.80[EUR][1000 genomes]
rs6482279	0.80[EUR][1000 genomes]
rs7079051	0.85[EUR][1000 genomes]
rs7079567	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs7082637	0.84[EUR][1000 genomes]
rs7893165	0.80[EUR][1000 genomes]
rs7909037	0.82[EUR][1000 genomes]
rs7911376	0.80[EUR][1000 genomes]
rs7917515	0.90[CEU][hapmap]
rs7918459	0.85[EUR][1000 genomes]
rs7920535	0.84[CEU][hapmap]
rs7923271	0.82[EUR][1000 genomes]
rs907451	0.90[CEU][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes]
rs962705	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs956007	DNAJC1	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23719600-23722200	Enhancers	Stomach Mucosa	stomach
2	chr10:23720200-23723800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:23720600-23721800	Enhancers	NHEK	skin
4	chr10:23720800-23722000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:23720800-23722000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr10:23721000-23721800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:23721000-23721800	Enhancers	HMEC	breast
8	chr10:23721000-23722000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:23721000-23722000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:23721000-23722000	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr10:23721400-23721600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr10:23721400-23721800	Active TSS	Primary B cells from cord blood	blood
13	chr10:23721400-23721800	Flanking Active TSS	Hela-S3	cervix
14	chr10:23721400-23722000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:23721400-23727400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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