Variant report

Variant	rs11013520
Chromosome Location	chr10:23770848-23770849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23728196..23730088-chr10:23768920..23770876,3	MCF-7	breast:
2	chr10:23747675..23750331-chr10:23769327..23772005,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165312	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10828465	0.82[EUR][1000 genomes]
rs10828466	0.82[EUR][1000 genomes]
rs11013470	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11013499	0.89[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11013500	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11013514	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12266853	0.82[EUR][1000 genomes]
rs12358270	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12767397	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs12780687	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1546521	0.93[EUR][1000 genomes]
rs16923263	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2036922	0.81[ASN][1000 genomes]
rs2055920	0.93[EUR][1000 genomes]
rs2055921	0.93[EUR][1000 genomes]
rs2055922	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2366161	0.91[EUR][1000 genomes]
rs2366162	0.89[EUR][1000 genomes]
rs2886588	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4333914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4747477	0.93[EUR][1000 genomes]
rs4747478	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs4748896	0.83[EUR][1000 genomes]
rs4748897	0.94[EUR][1000 genomes]
rs4748898	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs4748902	0.85[EUR][1000 genomes]
rs4990826	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6482284	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6482285	0.93[EUR][1000 genomes]
rs6482286	0.93[EUR][1000 genomes]
rs6482290	0.86[EUR][1000 genomes]
rs7073367	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7083824	0.93[EUR][1000 genomes]
rs7083923	0.80[EUR][1000 genomes]
rs7085999	0.89[EUR][1000 genomes]
rs7087736	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7899130	0.80[EUR][1000 genomes]
rs7900252	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7901238	0.82[EUR][1000 genomes]
rs7903159	0.91[EUR][1000 genomes]
rs7904301	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7909322	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7913300	0.93[EUR][1000 genomes]
rs7918459	0.81[ASN][1000 genomes]
rs956007	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs962705	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23768000-23771000	Enhancers	Liver	Liver
2	chr10:23770600-23771000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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