Variant report

Variant	rs4990826
Chromosome Location	chr10:23778598-23778599
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10828465	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828466	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828467	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828469	0.82[ASN][1000 genomes]
rs11013470	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013499	0.83[ASN][1000 genomes]
rs11013500	0.83[ASN][1000 genomes]
rs11013514	0.85[ASN][1000 genomes]
rs11013520	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013531	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11013540	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11013541	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11013543	0.81[ASN][1000 genomes]
rs12244668	0.82[ASN][1000 genomes]
rs12254275	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12261799	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12263327	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12266577	0.82[ASN][1000 genomes]
rs12266853	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12358270	0.83[ASN][1000 genomes]
rs12767397	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs12780687	0.86[ASN][1000 genomes]
rs1337324	0.80[EUR][1000 genomes]
rs1546521	0.96[EUR][1000 genomes]
rs16923263	0.83[ASN][1000 genomes]
rs1877325	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1877326	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1877327	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1877328	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2055920	0.96[EUR][1000 genomes]
rs2055921	0.96[EUR][1000 genomes]
rs2055922	0.85[ASN][1000 genomes]
rs2366161	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2366162	0.96[EUR][1000 genomes]
rs2886588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4333914	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4359093	0.80[EUR][1000 genomes]
rs4564227	0.82[ASN][1000 genomes]
rs4747477	0.96[EUR][1000 genomes]
rs4747478	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs4748896	0.87[EUR][1000 genomes]
rs4748897	0.97[EUR][1000 genomes]
rs4748898	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs4748902	0.92[EUR][1000 genomes]
rs6482284	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6482285	0.96[EUR][1000 genomes]
rs6482286	0.96[EUR][1000 genomes]
rs6482290	0.92[EUR][1000 genomes]
rs6482291	0.82[ASN][1000 genomes]
rs7071059	0.84[EUR][1000 genomes]
rs7073367	0.92[EUR][1000 genomes]
rs7083824	0.96[EUR][1000 genomes]
rs7083923	0.84[EUR][1000 genomes]
rs7085999	0.92[EUR][1000 genomes]
rs7087736	0.96[EUR][1000 genomes]
rs7899130	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7900252	0.90[EUR][1000 genomes]
rs7901238	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7903159	0.94[EUR][1000 genomes]
rs7904301	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7909322	0.92[EUR][1000 genomes]
rs7913300	0.96[EUR][1000 genomes]
rs7913401	0.80[EUR][1000 genomes]
rs962705	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23778400-23779200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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