Variant report

Variant	rs7900252
Chromosome Location	chr10:23762392-23762393
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11013470	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11013499	0.81[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013500	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013502	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11013514	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11013520	0.95[CEU][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12358270	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12767397	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs12780687	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1546521	0.91[EUR][1000 genomes]
rs16923263	0.82[ASN][1000 genomes]
rs2036922	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2055920	0.91[EUR][1000 genomes]
rs2055921	0.91[EUR][1000 genomes]
rs2055922	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2055923	0.96[ASN][1000 genomes]
rs2366161	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2366162	0.87[EUR][1000 genomes]
rs2886588	0.90[EUR][1000 genomes]
rs35256322	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4333914	0.95[CEU][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4427471	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4747477	0.91[EUR][1000 genomes]
rs4747478	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs4748896	0.82[EUR][1000 genomes]
rs4748897	0.92[EUR][1000 genomes]
rs4748898	0.91[CEU][hapmap];0.80[TSI][hapmap];0.91[EUR][1000 genomes]
rs4748902	0.82[EUR][1000 genomes]
rs4990826	0.90[EUR][1000 genomes]
rs6415970	0.95[ASN][1000 genomes]
rs6482284	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6482285	0.91[EUR][1000 genomes]
rs6482286	0.91[EUR][1000 genomes]
rs6482290	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7073367	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7079051	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7083824	0.91[EUR][1000 genomes]
rs7085999	0.92[EUR][1000 genomes]
rs7087736	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7903159	0.94[EUR][1000 genomes]
rs7904301	0.83[EUR][1000 genomes]
rs7909322	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7913300	0.91[EUR][1000 genomes]
rs7918459	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs962705	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23761200-23762400	Weak transcription	H9 Cell Line	embryonic stem cell

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