Variant report

Variant	rs2055923
Chromosome Location	chr10:23760147-23760148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10734047	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10741027	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10741028	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10741029	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10828459	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11013499	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013500	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11013502	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013507	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11013514	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12246098	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12250542	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12358270	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12767397	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12780687	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1473079	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1546521	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16923263	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1877324	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2036922	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2055920	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2055921	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2055922	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2175500	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2175501	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2366161	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35065452	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35256322	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4325223	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4427471	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4500392	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4747477	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4747478	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4748888	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4748892	0.88[EUR][1000 genomes]
rs4748893	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4748894	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4748898	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6415970	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6482278	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6482279	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6482280	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6482284	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6482285	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482286	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6482290	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7073367	0.94[ASN][1000 genomes]
rs7079051	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7079567	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7082637	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7083824	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7085009	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7085999	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7087736	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7089300	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7893165	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7900252	0.96[ASN][1000 genomes]
rs7903159	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7909037	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7909322	0.94[ASN][1000 genomes]
rs7911376	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7913300	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7917515	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7918459	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7923271	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs907451	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs962705	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23759200-23761600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:23759400-23760600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:23759600-23760800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:23759800-23760600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:23759800-23760800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:23760000-23760200	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:23760000-23760800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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