Variant report

Variant	rs11013514
Chromosome Location	chr10:23759601-23759602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10734047	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs10741027	0.88[EUR][1000 genomes]
rs10741028	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs10741029	0.89[EUR][1000 genomes]
rs10828459	0.90[EUR][1000 genomes]
rs11013470	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013499	0.89[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013500	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013502	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11013507	0.89[EUR][1000 genomes]
rs11013520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12246098	0.89[EUR][1000 genomes]
rs12250542	0.89[EUR][1000 genomes]
rs12358270	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12780687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1473079	0.89[EUR][1000 genomes]
rs16923263	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1877324	0.93[EUR][1000 genomes]
rs2036922	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2055922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2055923	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2175500	0.91[EUR][1000 genomes]
rs2175501	0.91[EUR][1000 genomes]
rs2886588	0.85[ASN][1000 genomes]
rs35065452	0.88[EUR][1000 genomes]
rs35256322	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4325223	0.89[EUR][1000 genomes]
rs4333914	1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4427471	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4500392	0.89[EUR][1000 genomes]
rs4748888	0.87[EUR][1000 genomes]
rs4748892	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4748893	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs4748894	0.89[EUR][1000 genomes]
rs4748898	0.82[GIH][hapmap]
rs4990826	0.85[ASN][1000 genomes]
rs6415970	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6482278	0.88[EUR][1000 genomes]
rs6482279	0.89[EUR][1000 genomes]
rs6482280	0.91[EUR][1000 genomes]
rs6482284	0.82[ASN][1000 genomes]
rs7073367	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7079051	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7079567	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs7082637	0.87[EUR][1000 genomes]
rs7085009	0.93[EUR][1000 genomes]
rs7087736	0.82[ASN][1000 genomes]
rs7089300	0.93[EUR][1000 genomes]
rs7893165	0.89[EUR][1000 genomes]
rs7900252	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7909037	0.89[EUR][1000 genomes]
rs7909322	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7911376	0.89[EUR][1000 genomes]
rs7917515	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7918459	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7920535	0.95[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap]
rs7923271	0.89[EUR][1000 genomes]
rs907451	0.90[CEU][hapmap];0.82[GIH][hapmap];0.87[EUR][1000 genomes]
rs956007	0.92[ASW][hapmap];0.90[CEU][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs962705	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11013514	DNAJC1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23758200-23759800	Enhancers	Fetal Heart	heart
2	chr10:23758600-23759800	Enhancers	Rectal Smooth Muscle	rectum
3	chr10:23759200-23761600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:23759400-23759800	Enhancers	Fetal Stomach	stomach
5	chr10:23759400-23760600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:23759600-23759800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:23759600-23759800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:23759600-23760000	Enhancers	Colon Smooth Muscle	Colon
9	chr10:23759600-23760800	Weak transcription	H9 Cell Line	embryonic stem cell

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