Variant report

Variant	rs11013470
Chromosome Location	chr10:23713792-23713793
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23707659..23710608-chr10:23712696..23714287,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11013499	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013500	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013502	0.83[ASN][1000 genomes]
rs11013514	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013520	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12358270	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12767397	0.83[EUR][1000 genomes]
rs12780687	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1546521	0.83[EUR][1000 genomes]
rs16923263	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2036922	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2055920	0.83[EUR][1000 genomes]
rs2055921	0.83[EUR][1000 genomes]
rs2055922	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2886588	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35256322	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4333914	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4427471	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4747477	0.83[EUR][1000 genomes]
rs4747478	0.83[EUR][1000 genomes]
rs4748892	0.81[EUR][1000 genomes]
rs4748897	0.84[EUR][1000 genomes]
rs4748898	0.83[EUR][1000 genomes]
rs4990826	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6415970	0.84[ASN][1000 genomes]
rs6482284	0.84[EUR][1000 genomes]
rs6482285	0.83[EUR][1000 genomes]
rs6482286	0.83[EUR][1000 genomes]
rs7073367	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7079051	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7083824	0.83[EUR][1000 genomes]
rs7085999	0.86[EUR][1000 genomes]
rs7087736	0.83[EUR][1000 genomes]
rs7900252	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7903159	0.86[EUR][1000 genomes]
rs7909322	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7913300	0.83[EUR][1000 genomes]
rs7918459	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs956007	0.88[AMR][1000 genomes]
rs962705	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23712000-23719000	Weak transcription	Stomach Mucosa	stomach

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