Variant report

Variant	rs12358270
Chromosome Location	chr10:23753254-23753255
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23744620..23747012-chr10:23752553..23755040,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10734047	0.93[EUR][1000 genomes]
rs10741027	0.91[EUR][1000 genomes]
rs10741028	0.93[EUR][1000 genomes]
rs10741029	0.93[EUR][1000 genomes]
rs10828459	0.94[EUR][1000 genomes]
rs11013470	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11013499	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013500	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11013502	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11013507	0.91[EUR][1000 genomes]
rs11013514	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11013520	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12246098	0.93[EUR][1000 genomes]
rs12250542	0.93[EUR][1000 genomes]
rs12780687	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1473079	0.93[EUR][1000 genomes]
rs16923263	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877324	0.89[EUR][1000 genomes]
rs2036922	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2055922	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2055923	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2175500	0.92[EUR][1000 genomes]
rs2175501	0.92[EUR][1000 genomes]
rs2886588	0.83[ASN][1000 genomes]
rs35065452	0.91[EUR][1000 genomes]
rs35256322	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4325223	0.93[EUR][1000 genomes]
rs4333914	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4427471	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4500392	0.93[EUR][1000 genomes]
rs4748888	0.89[EUR][1000 genomes]
rs4748892	0.98[EUR][1000 genomes]
rs4748893	0.93[EUR][1000 genomes]
rs4748894	0.93[EUR][1000 genomes]
rs4990826	0.83[ASN][1000 genomes]
rs6415970	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6482278	0.90[EUR][1000 genomes]
rs6482279	0.93[EUR][1000 genomes]
rs6482280	0.92[EUR][1000 genomes]
rs6482284	0.80[ASN][1000 genomes]
rs7073367	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7079051	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7079567	0.93[EUR][1000 genomes]
rs7082637	0.89[EUR][1000 genomes]
rs7085009	0.89[EUR][1000 genomes]
rs7087736	0.80[ASN][1000 genomes]
rs7089300	0.89[EUR][1000 genomes]
rs7893165	0.93[EUR][1000 genomes]
rs7900252	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7909037	0.91[EUR][1000 genomes]
rs7909322	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7911376	0.93[EUR][1000 genomes]
rs7917515	0.89[EUR][1000 genomes]
rs7918459	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7923271	0.91[EUR][1000 genomes]
rs907451	0.89[EUR][1000 genomes]
rs956007	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs962705	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23748600-23754000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:23751000-23759200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:23751200-23758400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:23751400-23754800	Weak transcription	Fetal Heart	heart

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