Variant report

Variant	rs4748902
Chromosome Location	chr10:23785362-23785363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10734047	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs10741027	0.85[ASN][1000 genomes]
rs10741028	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs10741029	0.86[ASN][1000 genomes]
rs10828459	0.82[ASN][1000 genomes]
rs10828465	0.92[EUR][1000 genomes]
rs10828466	0.92[EUR][1000 genomes]
rs10828467	0.90[EUR][1000 genomes]
rs10828469	0.83[EUR][1000 genomes]
rs10828470	0.84[EUR][1000 genomes]
rs11013507	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11013520	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs11013531	0.91[EUR][1000 genomes]
rs11013540	0.88[EUR][1000 genomes]
rs11013541	0.89[EUR][1000 genomes]
rs11013543	0.83[EUR][1000 genomes]
rs11013545	0.80[EUR][1000 genomes]
rs12244668	0.83[EUR][1000 genomes]
rs12246098	0.85[ASN][1000 genomes]
rs12250542	0.86[ASN][1000 genomes]
rs12254275	0.88[EUR][1000 genomes]
rs12261799	0.88[EUR][1000 genomes]
rs12263327	0.87[EUR][1000 genomes]
rs12266577	0.83[EUR][1000 genomes]
rs12266853	0.93[EUR][1000 genomes]
rs12767397	0.91[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1337324	0.83[EUR][1000 genomes]
rs1337325	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1473079	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1546521	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1856113	0.84[EUR][1000 genomes]
rs1877324	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1877325	0.91[EUR][1000 genomes]
rs1877326	0.91[EUR][1000 genomes]
rs1877327	0.91[EUR][1000 genomes]
rs1877328	0.91[EUR][1000 genomes]
rs1985697	0.84[EUR][1000 genomes]
rs2055920	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2055921	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2175500	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2175501	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2366161	0.91[EUR][1000 genomes]
rs2366162	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2886588	0.92[EUR][1000 genomes]
rs35065452	0.86[ASN][1000 genomes]
rs4008949	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4325223	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4333914	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs4359093	0.86[EUR][1000 genomes]
rs4500392	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4564227	0.83[EUR][1000 genomes]
rs4747477	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4747478	0.91[CEU][hapmap];0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748888	0.83[ASN][1000 genomes]
rs4748892	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs4748893	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs4748894	0.86[ASN][1000 genomes]
rs4748896	0.81[EUR][1000 genomes]
rs4748897	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4748898	0.91[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4990826	0.92[EUR][1000 genomes]
rs6482278	0.83[ASN][1000 genomes]
rs6482279	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6482280	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6482284	0.90[EUR][1000 genomes]
rs6482285	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6482286	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6482290	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6482291	0.83[EUR][1000 genomes]
rs6482292	0.83[EUR][1000 genomes]
rs7071059	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7073367	0.84[EUR][1000 genomes]
rs7079567	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs7082637	0.83[ASN][1000 genomes]
rs7083824	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7085009	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7085999	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7087736	0.88[EUR][1000 genomes]
rs7089300	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7097155	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7893165	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7899130	0.91[EUR][1000 genomes]
rs7900252	0.82[EUR][1000 genomes]
rs7901238	0.92[EUR][1000 genomes]
rs7903159	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7904301	0.99[EUR][1000 genomes]
rs7909037	0.86[ASN][1000 genomes]
rs7909322	0.84[EUR][1000 genomes]
rs7911376	0.86[ASN][1000 genomes]
rs7913300	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7913401	0.83[EUR][1000 genomes]
rs7917515	0.91[CHB][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7920535	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs7923271	0.86[ASN][1000 genomes]
rs907451	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs983989	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs983990	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23785200-23786000	Enhancers	Skeletal Muscle Male	skeletal muscle

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