Variant report

Variant	rs12244668
Chromosome Location	chr10:23801360-23801361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10741030	0.81[EUR][1000 genomes]
rs10828465	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828466	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828467	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828469	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828470	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828474	0.80[EUR][1000 genomes]
rs10828475	0.81[EUR][1000 genomes]
rs11013520	0.95[CEU][hapmap];0.90[CHB][hapmap]
rs11013531	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11013540	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013541	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11013543	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013545	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11013557	0.81[EUR][1000 genomes]
rs12254275	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12261799	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12263327	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12266577	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266853	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12767397	0.91[CEU][hapmap]
rs1337324	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1337325	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1415418	0.81[EUR][1000 genomes]
rs1856113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1877325	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1877326	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1877327	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1877328	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1984173	0.82[EUR][1000 genomes]
rs1985697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2886588	0.82[ASN][1000 genomes]
rs4008949	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4333914	0.95[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap]
rs4359093	0.92[EUR][1000 genomes]
rs4434903	0.81[AMR][1000 genomes]
rs4564227	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4747478	0.91[CEU][hapmap]
rs4748898	0.91[CEU][hapmap];0.90[TSI][hapmap]
rs4748902	0.83[EUR][1000 genomes]
rs4990826	0.82[ASN][1000 genomes]
rs6482290	0.84[EUR][1000 genomes]
rs6482291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6482293	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7071059	0.85[EUR][1000 genomes]
rs7097155	0.99[EUR][1000 genomes]
rs7899130	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7901238	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904301	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7907290	0.92[EUR][1000 genomes]
rs7908703	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7908715	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7913401	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7920535	0.81[GIH][hapmap]
rs7921141	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs983989	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs983990	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12244668	MYO3A	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23800800-23803200	Enhancers	Hela-S3	cervix
2	chr10:23801200-23801400	Enhancers	HSMMtube	muscle
3	chr10:23801200-23801600	Enhancers	HMEC	breast
4	chr10:23801200-23801800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:23801200-23802000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:23801200-23802000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:23801200-23802000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:23801200-23802000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:23801200-23802200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:23801200-23802200	Flanking Active TSS	K562	blood

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