Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10741030	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10828469	0.81[EUR][1000 genomes]
rs10828470	0.82[EUR][1000 genomes]
rs10828474	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11013520	0.84[CEU][hapmap]
rs11013543	0.82[EUR][1000 genomes]
rs11013549	0.81[EUR][1000 genomes]
rs11013557	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12244668	0.81[EUR][1000 genomes]
rs12266577	0.81[EUR][1000 genomes]
rs1337324	0.81[EUR][1000 genomes]
rs1337325	0.80[EUR][1000 genomes]
rs1415418	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1856113	0.82[EUR][1000 genomes]
rs1984173	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1985697	0.82[EUR][1000 genomes]
rs4008949	0.81[EUR][1000 genomes]
rs4333914	0.84[CEU][hapmap]
rs4387257	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4570482	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482291	0.81[EUR][1000 genomes]
rs6482292	0.81[EUR][1000 genomes]
rs7097155	0.81[EUR][1000 genomes]
rs7907290	0.85[EUR][1000 genomes]
rs7913401	0.81[EUR][1000 genomes]
rs983989	0.81[EUR][1000 genomes]
rs983990	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv466835	chr10:23801555-23869175	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv550215	chr10:23801555-23869175	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23823600-23828200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:23823800-23828000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:23824000-23827600	Weak transcription	Fetal Thymus	thymus
4	chr10:23824000-23827800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:23824200-23828200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:23824200-23828200	Weak transcription	Thymus	Thymus
7	chr10:23825200-23827800	Enhancers	Primary T cells from cord blood	blood
8	chr10:23825600-23827800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:23825600-23828200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr10:23826000-23829000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:23826000-23829400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:23826400-23827800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:23826600-23827400	Weak transcription	Dnd41	blood
14	chr10:23826600-23827600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:23826600-23828200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:23826800-23828000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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