Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10741030	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828469	0.80[EUR][1000 genomes]
rs10828470	0.81[EUR][1000 genomes]
rs10828474	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828475	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11013520	0.84[CEU][hapmap]
rs11013543	0.81[EUR][1000 genomes]
rs11013549	0.81[EUR][1000 genomes]
rs11013557	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12244668	0.81[EUR][1000 genomes]
rs12266577	0.80[EUR][1000 genomes]
rs1337324	0.81[EUR][1000 genomes]
rs1337325	0.81[EUR][1000 genomes]
rs1856113	0.81[EUR][1000 genomes]
rs1984173	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1985697	0.81[EUR][1000 genomes]
rs4008949	0.81[EUR][1000 genomes]
rs4333914	0.84[CEU][hapmap]
rs4387257	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4570482	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6482291	0.81[EUR][1000 genomes]
rs6482292	0.81[EUR][1000 genomes]
rs7097155	0.81[EUR][1000 genomes]
rs7907290	0.87[EUR][1000 genomes]
rs7913401	0.81[EUR][1000 genomes]
rs983989	0.82[EUR][1000 genomes]
rs983990	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv466835	chr10:23801555-23869175	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv550215	chr10:23801555-23869175	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1415418	MYO3A	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23821600-23824600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr10:23821600-23824600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:23823000-23824000	Enhancers	Fetal Thymus	thymus
4	chr10:23823000-23826400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:23823200-23823600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:23823200-23823600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:23823200-23823800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:23823200-23824000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:23823200-23824000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:23823200-23824200	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:23823200-23824200	Enhancers	Thymus	Thymus
12	chr10:23823200-23824200	Enhancers	Dnd41	blood
13	chr10:23823200-23824400	Enhancers	Primary T cells from cord blood	blood
14	chr10:23823400-23824000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:23823400-23824000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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