Variant report

Variant	rs983990
Chromosome Location	chr10:23806382-23806383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10741030	0.82[EUR][1000 genomes]
rs10828465	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828466	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828467	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828469	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828470	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828474	0.81[EUR][1000 genomes]
rs10828475	0.82[EUR][1000 genomes]
rs11013520	0.95[CEU][hapmap];0.90[CHB][hapmap]
rs11013531	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11013540	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11013541	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11013543	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11013545	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11013557	0.81[EUR][1000 genomes]
rs12244668	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12254275	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12261799	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12263327	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12266577	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12266853	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12767397	0.91[CEU][hapmap]
rs1337324	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1337325	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1415418	0.81[EUR][1000 genomes]
rs1856113	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877325	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1877326	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1877327	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1877328	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1984173	0.83[EUR][1000 genomes]
rs1985697	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4008949	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4333914	0.95[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap]
rs4359093	0.91[EUR][1000 genomes]
rs4434903	0.82[AMR][1000 genomes]
rs4564227	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4747478	0.91[CEU][hapmap]
rs4748898	0.91[CEU][hapmap];0.90[TSI][hapmap]
rs4748902	0.84[EUR][1000 genomes]
rs6482290	0.84[EUR][1000 genomes]
rs6482291	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6482292	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6482293	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7071059	0.85[EUR][1000 genomes]
rs7097155	0.99[EUR][1000 genomes]
rs7899130	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7901238	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7904301	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7907290	0.93[EUR][1000 genomes]
rs7908703	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7908715	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913401	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920535	0.81[GIH][hapmap]
rs7921141	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs983989	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831811	chr10:23734326-23913370	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv466835	chr10:23801555-23869175	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv550215	chr10:23801555-23869175	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv2761580	chr10:23804215-23806382	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs983990	OTUD1	cis	Liver	GTEx
rs983990	MYO3A	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23805600-23806800	Enhancers	Liver	Liver
2	chr10:23805600-23806800	Enhancers	HepG2	liver
3	chr10:23806200-23807000	Enhancers	Primary monocytes fromperipheralblood	blood

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