Variant report

Variant	rs10828598
Chromosome Location	chr10:18659517-18659518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10741039	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10741041	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828608	0.93[ASN][1000 genomes]
rs1325993	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1325994	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1409207	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2031570	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2148185	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2148186	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6482355	0.89[ASN][1000 genomes]
rs6482356	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6482368	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7072277	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7072399	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7082391	0.91[ASN][1000 genomes]
rs7898858	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7908876	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7913836	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7919809	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7921548	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7923885	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10828598	NSUN6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
2	chr10:18652400-18667400	Weak transcription	Left Ventricle	heart
3	chr10:18658000-18664800	Weak transcription	Fetal Heart	heart
4	chr10:18658600-18659600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart

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