Variant report

Variant	rs7908876
Chromosome Location	chr10:18668624-18668625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10741039	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10741041	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10764437	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10764440	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10828598	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11013835	0.94[ASN][1000 genomes]
rs1277840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1277841	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1290126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1325993	0.96[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1325994	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1325995	1.00[ASN][1000 genomes]
rs1409207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2031570	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2148185	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2148186	0.85[CEU][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2489195	0.85[ASN][1000 genomes]
rs2489196	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2489198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4748458	0.83[CEU][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs6482355	0.83[CEU][hapmap]
rs6482356	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6482368	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7072277	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7072399	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7078741	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7080181	0.94[ASN][1000 genomes]
rs7090503	0.83[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7898858	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7913836	0.96[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7921548	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7923885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7908876	NSUN6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart
2	chr10:18665200-18680400	Weak transcription	Fetal Stomach	stomach
3	chr10:18666400-18682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:18667000-18669600	Weak transcription	Fetal Heart	heart
5	chr10:18667400-18669000	Enhancers	Left Ventricle	heart
6	chr10:18667800-18672200	Weak transcription	Ovary	ovary
7	chr10:18668000-18669400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:18668200-18668800	Enhancers	Right Atrium	heart
9	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:18668600-18668800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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