Variant report

Variant	rs1290126
Chromosome Location	chr10:18639462-18639463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10764437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10764440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11013835	0.91[ASN][1000 genomes]
rs1277840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1277841	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1325995	0.85[ASN][1000 genomes]
rs1409207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2148185	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2148186	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2489195	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2489196	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4748458	0.82[JPT][hapmap]
rs6482356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7078741	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7080181	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7090503	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7898858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7908876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7921548	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7923885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18634800-18640200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:18635800-18640600	Enhancers	Fetal Heart	heart
3	chr10:18638200-18641000	Weak transcription	Fetal Brain Male	brain
4	chr10:18638400-18640600	Enhancers	Fetal Brain Female	brain
5	chr10:18638400-18642400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:18639200-18639600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr10:18639200-18639600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:18639200-18639600	Enhancers	Esophagus	oesophagus
9	chr10:18639200-18639600	Enhancers	Left Ventricle	heart
10	chr10:18639200-18639600	Enhancers	Right Atrium	heart
11	chr10:18639200-18639600	Enhancers	Right Ventricle	heart
12	chr10:18639200-18639800	Enhancers	Ovary	ovary
13	chr10:18639200-18639800	Enhancers	Pancreas	Pancrea
14	chr10:18639200-18640400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:18639200-18640600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:18639400-18639600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:18639400-18639600	Enhancers	Aorta	Aorta
18	chr10:18639400-18639800	Enhancers	Brain Germinal Matrix	brain
19	chr10:18639400-18639800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr10:18639400-18640000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:18639400-18640200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:18639400-18641600	Enhancers	Primary B cells from cord blood	blood

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