Variant report

Variant	rs1277840
Chromosome Location	chr10:18641841-18641842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10764437	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10764440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11013835	0.91[ASN][1000 genomes]
rs1277841	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1290126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1325995	0.85[ASN][1000 genomes]
rs1409207	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2148185	0.85[ASN][1000 genomes]
rs2148186	0.85[ASN][1000 genomes]
rs2489195	1.00[ASN][1000 genomes]
rs2489196	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2489198	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4748458	0.82[JPT][hapmap]
rs6482355	0.86[CEU][hapmap]
rs6482356	1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7078741	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7080181	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7090503	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7898858	1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs7908876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7921548	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7923885	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18638400-18642400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:18639600-18643200	Weak transcription	Left Ventricle	heart
3	chr10:18639600-18652200	Weak transcription	Right Atrium	heart
4	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
5	chr10:18639800-18650600	Weak transcription	Pancreas	Pancrea
6	chr10:18639800-18651600	Weak transcription	Ovary	ovary
7	chr10:18640400-18647600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:18641000-18644200	Enhancers	Fetal Heart	heart
9	chr10:18641800-18642600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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