Variant report

Variant	rs2148185
Chromosome Location	chr10:18652575-18652576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10741039	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10741041	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10764437	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10764440	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828598	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11013835	0.94[ASN][1000 genomes]
rs1277840	0.85[ASN][1000 genomes]
rs1277841	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1290126	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1325993	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1325994	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325995	1.00[ASN][1000 genomes]
rs1409207	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2031570	0.81[AFR][1000 genomes]
rs2148186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489195	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2489196	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2489198	0.85[ASN][1000 genomes]
rs4748458	0.83[ASN][1000 genomes]
rs6482355	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6482356	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6482368	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7072277	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7072399	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7078741	0.97[ASN][1000 genomes]
rs7080181	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7090503	0.94[ASN][1000 genomes]
rs7898858	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908876	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7913836	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7919809	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7921548	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7923885	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
2	chr10:18651800-18652600	Enhancers	Fetal Heart	heart
3	chr10:18652400-18654800	Weak transcription	Ovary	ovary
4	chr10:18652400-18667400	Weak transcription	Left Ventricle	heart

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