Variant report

Variant	rs1325993
Chromosome Location	chr10:18662768-18662769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10741039	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10741041	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764440	0.86[CEU][hapmap];0.81[YRI][hapmap]
rs10828598	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10828608	0.95[ASN][1000 genomes]
rs1277841	0.81[EUR][1000 genomes]
rs1325994	0.93[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1409207	0.96[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2031570	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2148185	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2148186	0.89[CEU][hapmap];0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6482355	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6482356	0.92[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6482368	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7072277	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7072399	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7078741	0.82[CEU][hapmap]
rs7082391	0.93[ASN][1000 genomes]
rs7091833	0.84[AMR][1000 genomes]
rs7898858	0.92[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7908876	0.96[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7913836	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7919809	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7921548	0.88[EUR][1000 genomes]
rs7923885	0.93[CEU][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1325993	NSUN6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18652400-18667400	Weak transcription	Left Ventricle	heart
2	chr10:18658000-18664800	Weak transcription	Fetal Heart	heart
3	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart
4	chr10:18662000-18667400	Weak transcription	Aorta	Aorta

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