Variant report

Variant	rs10764440
Chromosome Location	chr10:18649635-18649636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10741039	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10764437	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11013835	1.00[ASN][1000 genomes]
rs1277840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1277841	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1290126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1325993	0.86[CEU][hapmap];0.81[YRI][hapmap]
rs1325994	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1325995	0.94[ASN][1000 genomes]
rs1409207	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2148185	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2148186	0.88[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2489195	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2489196	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2489198	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4748458	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs6482355	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs6482356	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7072277	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7072399	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7078741	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7080181	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7090503	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7898858	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7908876	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7913836	0.85[CEU][hapmap];0.86[YRI][hapmap]
rs7919809	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7921548	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923885	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18639600-18652200	Weak transcription	Right Atrium	heart
2	chr10:18639600-18661400	Weak transcription	Aorta	Aorta
3	chr10:18639800-18650600	Weak transcription	Pancreas	Pancrea
4	chr10:18639800-18651600	Weak transcription	Ovary	ovary
5	chr10:18646800-18650000	Enhancers	Fetal Heart	heart
6	chr10:18647400-18651600	Weak transcription	Left Ventricle	heart
7	chr10:18648200-18650000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:18649200-18649800	Enhancers	Fetal Intestine Large	intestine
9	chr10:18649200-18649800	Enhancers	Sigmoid Colon	Sigmoid Colon

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