Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10764437	0.85[CEU][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs10764440	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs11013835	0.83[ASN][1000 genomes]
rs1277840	0.82[JPT][hapmap]
rs1290126	0.82[JPT][hapmap]
rs1325994	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1325995	0.83[ASN][1000 genomes]
rs1409207	0.82[CEU][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2148185	0.83[ASN][1000 genomes]
rs2148186	0.83[ASN][1000 genomes]
rs2489198	0.82[JPT][hapmap]
rs6482355	0.83[CEU][hapmap];0.87[YRI][hapmap]
rs6482356	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7078741	0.89[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7080181	0.83[ASN][1000 genomes]
rs7090503	0.93[CEU][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7898858	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7908876	0.83[CEU][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7921548	0.83[ASN][1000 genomes]
rs7923885	0.82[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv550041	chr10:18671921-18686452	Enhancers Weak transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4748458	NSUN6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart
2	chr10:18665200-18680400	Weak transcription	Fetal Stomach	stomach
3	chr10:18666400-18682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18669000-18689400	Weak transcription	Left Ventricle	heart
6	chr10:18670200-18675600	Weak transcription	Fetal Heart	heart
7	chr10:18673800-18674600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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