Variant report

Variant	rs7078741
Chromosome Location	chr10:18675148-18675149
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10764437	0.81[CEU][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]
rs10764440	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11013835	0.97[ASN][1000 genomes]
rs1277840	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1277841	0.88[ASN][1000 genomes]
rs1290126	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1325993	0.82[CEU][hapmap]
rs1325994	0.81[CEU][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1325995	0.97[ASN][1000 genomes]
rs1409207	0.94[ASW][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.94[ASN][1000 genomes]
rs2148185	0.97[ASN][1000 genomes]
rs2148186	0.97[ASN][1000 genomes]
rs2489195	0.88[ASN][1000 genomes]
rs2489196	0.88[ASN][1000 genomes]
rs2489198	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4748458	0.89[CEU][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6482355	0.86[CEU][hapmap]
rs6482356	0.89[ASW][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]
rs7080181	0.97[ASN][1000 genomes]
rs7090503	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898858	0.89[ASW][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7908876	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7913836	0.89[ASW][hapmap];0.82[CEU][hapmap];0.82[GIH][hapmap];0.81[TSI][hapmap]
rs7921548	0.97[ASN][1000 genomes]
rs7923885	1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv550041	chr10:18671921-18686452	Enhancers Weak transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7078741	NSUN6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart
2	chr10:18665200-18680400	Weak transcription	Fetal Stomach	stomach
3	chr10:18666400-18682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:18668400-18684000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:18669000-18689400	Weak transcription	Left Ventricle	heart
6	chr10:18670200-18675600	Weak transcription	Fetal Heart	heart

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