Variant report

Variant	rs7913836
Chromosome Location	chr10:18667085-18667086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10741039	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10741041	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10764437	0.89[ASW][hapmap];0.81[GIH][hapmap]
rs10764440	0.85[CEU][hapmap];0.86[YRI][hapmap]
rs10828598	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828608	0.96[ASN][1000 genomes]
rs1325993	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1325994	0.92[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1409207	0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[GIH][hapmap];0.91[LWK][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2031570	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2148185	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2148186	0.88[CEU][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6482355	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6482356	1.00[ASW][hapmap];0.92[CEU][hapmap];0.85[GIH][hapmap];0.82[LWK][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6482368	0.99[AFR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7072277	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7072399	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7078741	0.89[ASW][hapmap];0.82[CEU][hapmap];0.82[GIH][hapmap];0.81[TSI][hapmap]
rs7082391	0.94[ASN][1000 genomes]
rs7898858	1.00[ASW][hapmap];0.92[CEU][hapmap];0.85[GIH][hapmap];0.86[LWK][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7908876	0.96[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7919809	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7921548	0.85[EUR][1000 genomes]
rs7923885	0.92[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7913836	NSUN6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18652400-18667400	Weak transcription	Left Ventricle	heart
2	chr10:18659400-18676000	Weak transcription	Right Ventricle	heart
3	chr10:18662000-18667400	Weak transcription	Aorta	Aorta
4	chr10:18665200-18680400	Weak transcription	Fetal Stomach	stomach
5	chr10:18665800-18668200	Weak transcription	Right Atrium	heart
6	chr10:18666400-18667200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:18666400-18682400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:18666600-18667400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:18667000-18667600	Weak transcription	Liver	Liver
10	chr10:18667000-18669600	Weak transcription	Fetal Heart	heart

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