Variant report

Variant	rs10831082
Chromosome Location	chr11:93381048-93381049
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:92967484..92968450-chr11:93381041..93381968,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10741469	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10765619	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765623	0.90[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1080367	1.00[ASW][hapmap];0.92[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];0.88[LWK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10831083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831084	0.88[CEU][hapmap];0.88[CHB][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11020478	0.82[CHD][hapmap];0.83[GIH][hapmap];0.83[JPT][hapmap]
rs11020479	0.92[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11529070	0.92[EUR][1000 genomes]
rs1939568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1944108	1.00[ASW][hapmap];0.92[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.91[EUR][1000 genomes]
rs2186685	0.92[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes]
rs4363551	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4376865	0.84[EUR][1000 genomes]
rs4619111	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4753485	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603360	0.89[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap]
rs694699	0.91[EUR][1000 genomes]
rs7111796	0.92[EUR][1000 genomes]
rs7925086	0.92[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9888134	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv975401	chr11:93364502-93390549	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10831082	FOLR4	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93379000-93387800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:93379000-93388800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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