Variant report
| Variant | rs4619111 |
|---|---|
| Chromosome Location | chr11:93373509-93373510 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:93372093..93374223-chr11:93472267..93473882,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10741469 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10765619 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10765623 | 0.86[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1080367 | 0.88[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.90[EUR][1000 genomes] |
| rs10831082 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10831083 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10831084 | 0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11020478 | 0.80[JPT][hapmap] |
| rs11020479 | 0.89[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11529070 | 0.90[EUR][1000 genomes] |
| rs1939568 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1944108 | 0.88[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes] |
| rs2186685 | 0.89[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes] |
| rs4363551 | 0.90[EUR][1000 genomes] |
| rs4376865 | 0.81[EUR][1000 genomes] |
| rs4753485 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs603360 | 0.88[CHB][hapmap];0.81[JPT][hapmap] |
| rs694699 | 0.89[EUR][1000 genomes] |
| rs7111796 | 0.89[EUR][1000 genomes] |
| rs7925086 | 0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9888134 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898181 | chr11:93072843-93662459 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| 2 | nsv975401 | chr11:93364502-93390549 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:93371600-93375800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
