Variant report

Variant	rs11529070
Chromosome Location	chr11:93443628-93443629
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10741469	0.90[EUR][1000 genomes]
rs10765619	0.90[EUR][1000 genomes]
rs10765623	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1080367	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831082	0.92[EUR][1000 genomes]
rs10831083	0.94[EUR][1000 genomes]
rs10831084	0.89[EUR][1000 genomes]
rs11020478	0.86[ASN][1000 genomes]
rs11020479	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1939568	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1944108	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2186685	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4363551	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4376865	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4619111	0.90[EUR][1000 genomes]
rs4753485	0.92[EUR][1000 genomes]
rs603360	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs694699	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7111796	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7925086	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9888134	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93395600-93446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:93400400-93445600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:93410000-93444000	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr11:93420800-93444000	Strong transcription	Fetal Thymus	thymus
5	chr11:93423600-93450200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:93426800-93444600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:93427000-93465800	Strong transcription	Hela-S3	cervix
8	chr11:93430800-93465400	Weak transcription	Stomach Mucosa	stomach
9	chr11:93431400-93450400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:93431800-93448200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:93432200-93448200	Weak transcription	Spleen	Spleen
12	chr11:93432400-93448000	Weak transcription	Gastric	stomach
13	chr11:93432600-93448000	Weak transcription	Lung	lung
14	chr11:93432800-93448200	Weak transcription	Right Ventricle	heart
15	chr11:93436000-93454600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:93437200-93448000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:93437800-93448000	Weak transcription	Aorta	Aorta
18	chr11:93438000-93448400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:93439000-93444000	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr11:93439800-93444600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:93440000-93444000	Strong transcription	Stomach Smooth Muscle	stomach
22	chr11:93440200-93447800	Weak transcription	Placenta	Placenta
23	chr11:93440200-93460000	Weak transcription	NHLF	lung
24	chr11:93440800-93444000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:93440800-93444000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr11:93440800-93444000	Strong transcription	A549	lung
27	chr11:93440800-93445000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:93440800-93445000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
29	chr11:93441000-93444800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:93441000-93447400	Weak transcription	Esophagus	oesophagus
31	chr11:93441000-93447600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:93441200-93444200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:93441200-93444600	ZNF genes & repeats	GM12878-XiMat	blood
34	chr11:93441400-93444000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:93441400-93444000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
36	chr11:93441400-93444000	ZNF genes & repeats	Liver	Liver
37	chr11:93441400-93444000	Strong transcription	Colon Smooth Muscle	Colon
38	chr11:93441400-93444000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
39	chr11:93441400-93444200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:93441400-93444400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:93441400-93444400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:93441400-93444600	ZNF genes & repeats	Primary B cells from cord blood	blood
43	chr11:93441400-93444600	ZNF genes & repeats	Adipose Nuclei	Adipose
44	chr11:93441400-93445000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr11:93441400-93445000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:93441400-93445200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:93441400-93445800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:93441600-93444800	Weak transcription	Fetal Stomach	stomach
49	chr11:93441600-93449000	Weak transcription	Pancreas	Pancrea
50	chr11:93441600-93461200	Weak transcription	HSMMtube	muscle

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