Variant report

Variant	rs10831084
Chromosome Location	chr11:93393602-93393603
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93393142..93395279-chr11:93515864..93518097,3	K562	blood:
2	chr11:93393119..93395461-chr11:93422571..93425502,2	K562	blood:
3	chr11:93393010..93396864-chr11:93472820..93475395,3	K562	blood:
4	chr11:93393391..93395168-chr11:93473052..93476024,2	K562	blood:
5	chr11:93392460..93395279-chr11:93515167..93518670,4	K562	blood:

Variant related genes	Relation type
ENSG00000042429	Chromatin interaction
ENSG00000182919	Chromatin interaction
ENSG00000166004	Chromatin interaction
ENSG00000166012	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10741469	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10765619	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10765623	0.82[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1080367	0.80[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes]
rs10831082	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10831083	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11020478	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs11020479	0.81[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11529070	0.89[EUR][1000 genomes]
rs1939568	0.88[CEU][hapmap];0.88[CHB][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1944108	0.80[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes]
rs2186685	0.81[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4363551	0.89[EUR][1000 genomes]
rs4376865	0.81[EUR][1000 genomes]
rs4619111	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4753485	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs603360	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs694699	0.88[EUR][1000 genomes]
rs7111796	0.89[EUR][1000 genomes]
rs7925086	0.81[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9888134	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93389000-93393800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:93389200-93393800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr11:93389200-93394000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:93389400-93394000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:93389400-93394000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:93389400-93394200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:93389600-93394200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:93389600-93394200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:93389600-93394200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:93389600-93394200	Weak transcription	Fetal Thymus	thymus
11	chr11:93389600-93394200	Weak transcription	Thymus	Thymus
12	chr11:93389600-93394200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:93389800-93394000	Weak transcription	Primary T cells from cord blood	blood
14	chr11:93390200-93393800	Weak transcription	Dnd41	blood
15	chr11:93391800-93394400	Weak transcription	Fetal Brain Male	brain
16	chr11:93392200-93394400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr11:93392400-93394400	Weak transcription	Aorta	Aorta
18	chr11:93393200-93394200	Weak transcription	Brain Anterior Caudate	brain
19	chr11:93393400-93394000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:93393400-93394200	Enhancers	Primary T cells fromperipheralblood	blood
21	chr11:93393600-93393800	Enhancers	Fetal Brain Female	brain
22	chr11:93393600-93394000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:93393600-93394000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr11:93393600-93394200	Enhancers	Primary B cells from peripheral blood	blood
25	chr11:93393600-93394400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:93393600-93394600	Enhancers	HepG2	liver

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