Variant report

Variant	rs4376865
Chromosome Location	chr11:93436254-93436255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93430723..93433995-chr11:93435605..93437585,3	K562	blood:
2	chr11:93430723..93432846-chr11:93435605..93437585,2	K562	blood:

Variant related genes	Relation type
ENSG00000166004	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10741469	0.82[EUR][1000 genomes]
rs10765619	0.81[EUR][1000 genomes]
rs10765623	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1080367	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831082	0.84[EUR][1000 genomes]
rs10831083	0.86[EUR][1000 genomes]
rs10831084	0.81[EUR][1000 genomes]
rs11020478	0.84[ASN][1000 genomes]
rs11020479	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11529070	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1939568	0.86[EUR][1000 genomes]
rs1944108	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2186685	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4363551	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4619111	0.81[EUR][1000 genomes]
rs4753485	0.84[EUR][1000 genomes]
rs603360	0.96[ASN][1000 genomes]
rs694699	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7111796	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925086	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9888134	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv832232	chr11:93401314-93549438	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93395600-93446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:93397400-93441400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:93397600-93441000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:93398800-93440800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:93398800-93442200	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:93398800-93443200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:93399200-93439800	Strong transcription	Dnd41	blood
8	chr11:93399800-93442200	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:93400400-93443200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:93400400-93445600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:93410000-93444000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr11:93410200-93441400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:93411600-93441400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:93411600-93442400	Strong transcription	Fetal Intestine Large	intestine
15	chr11:93415600-93438200	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:93415600-93441400	Strong transcription	Liver	Liver
17	chr11:93415800-93438000	Strong transcription	Fetal Muscle Trunk	muscle
18	chr11:93415800-93442000	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr11:93416000-93440400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:93419800-93442400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:93420600-93441200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:93420800-93441400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:93420800-93444000	Strong transcription	Fetal Thymus	thymus
24	chr11:93421600-93442000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:93422600-93440600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:93422800-93436400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr11:93422800-93436400	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr11:93422800-93437400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:93423600-93442000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr11:93423600-93450200	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr11:93424000-93442600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:93424800-93440400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:93425600-93438000	Strong transcription	Fetal Muscle Leg	muscle
34	chr11:93426800-93443200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:93426800-93444600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:93427000-93441400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:93427000-93442600	Strong transcription	Duodenum Mucosa	Duodenum
38	chr11:93427000-93443400	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:93427000-93465800	Strong transcription	Hela-S3	cervix
40	chr11:93427200-93436400	Strong transcription	Primary hematopoietic stem cells	blood
41	chr11:93427400-93440800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:93427600-93441400	Strong transcription	Adipose Nuclei	Adipose
43	chr11:93427800-93436800	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:93428000-93438000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:93428600-93441200	Strong transcription	GM12878-XiMat	blood
46	chr11:93429200-93436400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:93429200-93437000	Strong transcription	HMEC	breast
48	chr11:93429200-93442000	Strong transcription	Brain Germinal Matrix	brain
49	chr11:93430400-93440000	Weak transcription	Colonic Mucosa	Colon
50	chr11:93430800-93465400	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links