Variant report

Variant	rs10831240
Chromosome Location	chr11:94280189-94280190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94279412..94282281-chr11:94323849..94325734,2	K562	blood:
2	chr11:94279156..94280673-chr11:94309932..94312809,2	K562	blood:
3	chr11:94251536..94253179-chr11:94279297..94281845,2	MCF-7	breast:
4	chr11:94279228..94280782-chr11:94283741..94285745,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1061956	0.83[GIH][hapmap];0.85[TSI][hapmap]
rs11020811	0.87[EUR][1000 genomes]
rs11020814	0.87[EUR][1000 genomes]
rs11020817	0.87[EUR][1000 genomes]
rs11020818	0.87[EUR][1000 genomes]
rs11020819	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs11020820	0.87[EUR][1000 genomes]
rs11020822	0.87[EUR][1000 genomes]
rs11828153	0.87[EUR][1000 genomes]
rs12273755	0.87[EUR][1000 genomes]
rs12279741	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284274	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285227	1.00[ASW][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285522	0.83[GIH][hapmap];0.85[TSI][hapmap]
rs12287908	1.00[EUR][1000 genomes]
rs12292208	0.83[GIH][hapmap];0.85[TSI][hapmap]
rs12708330	0.83[GIH][hapmap];0.85[TSI][hapmap]
rs12708331	0.83[GIH][hapmap];0.85[TSI][hapmap]
rs12708335	0.83[GIH][hapmap];0.85[TSI][hapmap]
rs12788248	0.83[GIH][hapmap];0.85[TSI][hapmap]
rs12790992	0.87[EUR][1000 genomes]
rs12793645	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794650	0.87[EUR][1000 genomes]
rs12796133	0.87[EUR][1000 genomes]
rs12800677	0.87[EUR][1000 genomes]
rs12802057	0.87[EUR][1000 genomes]
rs12805587	0.87[EUR][1000 genomes]
rs12806594	0.87[EUR][1000 genomes]
rs16924595	0.87[EUR][1000 genomes]
rs16924608	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs1805360	0.83[GIH][hapmap];0.85[TSI][hapmap]
rs2230273	0.85[GIH][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023718	0.87[EUR][1000 genomes]
rs34132851	0.87[EUR][1000 genomes]
rs34159027	0.87[EUR][1000 genomes]
rs34394615	0.87[EUR][1000 genomes]
rs34512155	0.87[EUR][1000 genomes]
rs34558505	0.87[EUR][1000 genomes]
rs34900271	0.87[EUR][1000 genomes]
rs34976180	1.00[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs35029646	0.87[EUR][1000 genomes]
rs35203856	0.87[EUR][1000 genomes]
rs35340764	0.87[EUR][1000 genomes]
rs35390767	0.87[EUR][1000 genomes]
rs35661972	0.87[EUR][1000 genomes]
rs35679802	0.87[EUR][1000 genomes]
rs35820823	0.87[EUR][1000 genomes]
rs35829171	0.87[EUR][1000 genomes]
rs36046116	0.87[EUR][1000 genomes]
rs36072739	0.87[EUR][1000 genomes]
rs7107508	0.83[ASN][1000 genomes]
rs7116255	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126380	0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs71460618	0.87[EUR][1000 genomes]
rs71460619	0.87[EUR][1000 genomes]
rs71479607	0.87[EUR][1000 genomes]
rs71479608	0.87[EUR][1000 genomes]
rs71479609	0.87[EUR][1000 genomes]
rs73521529	0.87[EUR][1000 genomes]
rs73521530	0.87[EUR][1000 genomes]
rs73521532	0.87[EUR][1000 genomes]
rs7926138	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs7944378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10831240	GSTT1	trans	lymphoblastoid	seeQTL

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94276600-94281000	Active TSS	Aorta	Aorta
2	chr11:94276800-94280200	Active TSS	Gastric	stomach
3	chr11:94276800-94280200	Active TSS	Rectal Smooth Muscle	rectum
4	chr11:94276800-94282600	Active TSS	Fetal Intestine Large	intestine
5	chr11:94277000-94281000	Active TSS	Stomach Mucosa	stomach
6	chr11:94277000-94283400	Active TSS	GM12878-XiMat	blood
7	chr11:94278000-94280200	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr11:94278000-94280600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:94278200-94280400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:94278200-94280400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr11:94278200-94280600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:94278200-94281000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
13	chr11:94278200-94281000	Transcr. at gene 5' and 3'	Dnd41	blood
14	chr11:94278200-94281200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr11:94278400-94280200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:94278400-94280400	Enhancers	HMEC	breast
17	chr11:94278400-94280600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:94278400-94280800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:94278400-94280800	Enhancers	Fetal Heart	heart
20	chr11:94278400-94283400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:94278600-94280400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr11:94278600-94280400	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
23	chr11:94278600-94280600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr11:94278600-94280600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:94278600-94281000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr11:94278600-94281000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr11:94278600-94282400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr11:94278600-94282400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:94278800-94280200	Enhancers	Liver	Liver
30	chr11:94278800-94280400	Enhancers	Spleen	Spleen
31	chr11:94278800-94280600	Active TSS	Colonic Mucosa	Colon
32	chr11:94278800-94281000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr11:94278800-94281000	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr11:94279000-94280200	Active TSS	A549	lung
35	chr11:94279000-94280400	Enhancers	Esophagus	oesophagus
36	chr11:94279000-94280400	Enhancers	Left Ventricle	heart
37	chr11:94279000-94280800	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr11:94279000-94281000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:94279000-94281400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr11:94279200-94280200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
41	chr11:94279200-94280200	Flanking Active TSS	Placenta Amnion	Placenta Amnion
42	chr11:94279200-94280200	Active TSS	Stomach Smooth Muscle	stomach
43	chr11:94279200-94280400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:94279200-94280400	Active TSS	NHLF	lung
45	chr11:94279200-94280600	Flanking Active TSS	Fetal Brain Male	brain
46	chr11:94279200-94280800	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr11:94279200-94281000	Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr11:94279200-94281200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:94279200-94282800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr11:94279200-94296000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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