Variant report

Variant	rs7116255
Chromosome Location	chr11:94279266-94279267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94279156..94280673-chr11:94309932..94312809,2	K562	blood:
2	chr11:94279228..94280782-chr11:94283741..94285745,2	MCF-7	breast:
3	chr11:94226771..94229140-chr11:94275887..94279295,4	K562	blood:

Variant related genes	Relation type
ENSG00000168876	Chromatin interaction
ENSG00000020922	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10831240	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020811	0.87[EUR][1000 genomes]
rs11020814	0.87[EUR][1000 genomes]
rs11020817	0.87[EUR][1000 genomes]
rs11020818	0.87[EUR][1000 genomes]
rs11020819	0.87[EUR][1000 genomes]
rs11020820	0.87[EUR][1000 genomes]
rs11020822	0.87[EUR][1000 genomes]
rs11828153	0.87[EUR][1000 genomes]
rs12273755	0.87[EUR][1000 genomes]
rs12279741	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284274	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285227	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12287908	1.00[EUR][1000 genomes]
rs12790992	0.87[EUR][1000 genomes]
rs12793645	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794650	0.87[EUR][1000 genomes]
rs12796133	0.87[EUR][1000 genomes]
rs12800677	0.87[EUR][1000 genomes]
rs12802057	0.87[EUR][1000 genomes]
rs12805587	0.87[EUR][1000 genomes]
rs12806594	0.87[EUR][1000 genomes]
rs16924595	0.87[EUR][1000 genomes]
rs16924608	0.87[EUR][1000 genomes]
rs2230273	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023718	0.87[EUR][1000 genomes]
rs34132851	0.87[EUR][1000 genomes]
rs34159027	0.87[EUR][1000 genomes]
rs34394615	0.87[EUR][1000 genomes]
rs34512155	0.87[EUR][1000 genomes]
rs34558505	0.87[EUR][1000 genomes]
rs34900271	0.87[EUR][1000 genomes]
rs34976180	0.87[EUR][1000 genomes]
rs35029646	0.87[EUR][1000 genomes]
rs35203856	0.87[EUR][1000 genomes]
rs35340764	0.87[EUR][1000 genomes]
rs35390767	0.87[EUR][1000 genomes]
rs35661972	0.87[EUR][1000 genomes]
rs35679802	0.87[EUR][1000 genomes]
rs35820823	0.87[EUR][1000 genomes]
rs35829171	0.87[EUR][1000 genomes]
rs36046116	0.87[EUR][1000 genomes]
rs36072739	0.87[EUR][1000 genomes]
rs7107508	0.83[ASN][1000 genomes]
rs7126380	0.83[ASN][1000 genomes]
rs71460618	0.87[EUR][1000 genomes]
rs71460619	0.87[EUR][1000 genomes]
rs71479607	0.87[EUR][1000 genomes]
rs71479608	0.87[EUR][1000 genomes]
rs71479609	0.87[EUR][1000 genomes]
rs73521529	0.87[EUR][1000 genomes]
rs73521530	0.87[EUR][1000 genomes]
rs73521532	0.87[EUR][1000 genomes]
rs7944378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390466	chr11:94276729-94279277	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94276400-94279600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:94276400-94280000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr11:94276600-94279400	Active TSS	Hela-S3	cervix
4	chr11:94276600-94279600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr11:94276600-94279600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:94276600-94281000	Active TSS	Aorta	Aorta
7	chr11:94276800-94279400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:94276800-94279400	Active TSS	Small Intestine	intestine
9	chr11:94276800-94279600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr11:94276800-94279600	Active TSS	HSMM	muscle
11	chr11:94276800-94279800	Active TSS	Brain Cingulate Gyrus	brain
12	chr11:94276800-94280000	Active TSS	Fetal Kidney	kidney
13	chr11:94276800-94280200	Active TSS	Gastric	stomach
14	chr11:94276800-94280200	Active TSS	Rectal Smooth Muscle	rectum
15	chr11:94276800-94282600	Active TSS	Fetal Intestine Large	intestine
16	chr11:94277000-94280000	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr11:94277000-94281000	Active TSS	Stomach Mucosa	stomach
18	chr11:94277000-94283400	Active TSS	GM12878-XiMat	blood
19	chr11:94277600-94280000	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr11:94277800-94279400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
21	chr11:94277800-94279400	Flanking Active TSS	Placenta	Placenta
22	chr11:94278000-94279600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr11:94278000-94279600	Flanking Active TSS	HUVEC	blood vessel
24	chr11:94278000-94280200	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr11:94278000-94280600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:94278200-94279400	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:94278200-94279400	Flanking Bivalent TSS/Enh	NHEK	skin
28	chr11:94278200-94279600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:94278200-94279600	Flanking Active TSS	NH-A	brain
30	chr11:94278200-94279800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
31	chr11:94278200-94280400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr11:94278200-94280400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr11:94278200-94280600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:94278200-94281000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr11:94278200-94281000	Transcr. at gene 5' and 3'	Dnd41	blood
36	chr11:94278200-94281200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr11:94278400-94279400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr11:94278400-94279400	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
39	chr11:94278400-94279400	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
40	chr11:94278400-94279400	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
41	chr11:94278400-94279400	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
42	chr11:94278400-94279600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:94278400-94280200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:94278400-94280400	Enhancers	HMEC	breast
45	chr11:94278400-94280600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:94278400-94280800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:94278400-94280800	Enhancers	Fetal Heart	heart
48	chr11:94278400-94283400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:94278600-94279400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
50	chr11:94278600-94279600	Enhancers	Ovary	ovary

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