Variant report

Variant	rs11020819
Chromosome Location	chr11:94270236-94270237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94268858..94270975-chr11:94276312..94278364,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1009455	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1009456	1.00[ASN][1000 genomes]
rs1061956	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs10831240	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs11020790	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020818	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020822	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828153	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273275	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279741	0.87[EUR][1000 genomes]
rs12284274	0.87[EUR][1000 genomes]
rs12285227	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285522	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287908	0.87[EUR][1000 genomes]
rs12292208	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1270117	1.00[ASN][1000 genomes]
rs12708330	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708331	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708332	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708333	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708334	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708335	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12786310	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788248	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788484	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790992	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793645	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12794650	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794843	1.00[ASN][1000 genomes]
rs12795215	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796917	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805023	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805587	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807066	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447612	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447635	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447636	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447640	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447665	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447672	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447713	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447745	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920263	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920449	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920466	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924595	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924608	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805360	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805365	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005495	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2230273	0.85[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs34023718	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34132851	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34159027	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34336989	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34394615	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34512155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34558505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34680397	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34704592	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731173	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34789107	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34900271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34936424	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34976180	1.00[GIH][hapmap];0.85[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029646	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35079690	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35101429	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35340764	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35389338	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35390767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35444165	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35575568	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35661972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35679802	1.00[EUR][1000 genomes]
rs35753481	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35814524	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35820823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35829171	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35931890	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971942	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046116	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36072739	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36111467	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36155619	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107508	0.87[EUR][1000 genomes]
rs7116255	0.87[EUR][1000 genomes]
rs7126380	0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs71305374	1.00[ASN][1000 genomes]
rs71460618	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71460619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477695	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477698	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479603	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479604	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479609	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521529	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521530	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926138	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932572	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936640	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944378	0.87[EUR][1000 genomes]
rs7949199	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94266400-94271200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:94267600-94270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:94267600-94276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:94267600-94276400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:94268000-94270600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr11:94268600-94271200	Enhancers	Stomach Mucosa	stomach
7	chr11:94268800-94271400	Enhancers	Fetal Intestine Small	intestine
8	chr11:94268800-94273400	Enhancers	Fetal Intestine Large	intestine
9	chr11:94268800-94273800	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:94269400-94271000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:94269400-94271200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:94269600-94270400	Enhancers	Aorta	Aorta
13	chr11:94269600-94271000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:94269600-94271200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:94269800-94270800	Weak transcription	HSMMtube	muscle
16	chr11:94269800-94271200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:94270000-94270400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:94270000-94270400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
19	chr11:94270000-94270800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:94270000-94271200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:94270000-94271200	Enhancers	HMEC	breast
22	chr11:94270000-94271200	Enhancers	HSMM	muscle
23	chr11:94270200-94270400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:94270200-94270400	Enhancers	Gastric	stomach
25	chr11:94270200-94270400	Flanking Active TSS	Osteobl	bone
26	chr11:94270200-94270600	Enhancers	Fetal Lung	lung
27	chr11:94270200-94271000	Enhancers	Small Intestine	intestine
28	chr11:94270200-94271200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:94270200-94271200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:94270200-94271200	Enhancers	Adipose Nuclei	Adipose
31	chr11:94270200-94271200	Enhancers	Colonic Mucosa	Colon
32	chr11:94270200-94271200	Enhancers	Right Atrium	heart
33	chr11:94270200-94271200	Enhancers	Sigmoid Colon	Sigmoid Colon

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