Variant report

Variant	rs71479604
Chromosome Location	chr11:94232640-94232641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94208946..94211928-chr11:94232056..94233967,2	MCF-7	breast:
2	chr11:94225979..94229384-chr11:94230397..94235421,9	K562	blood:
3	chr11:94232199..94234822-chr11:94243193..94245619,2	K562	blood:
4	chr11:94227017..94228715-chr11:94231164..94232764,2	MCF-7	breast:
5	chr11:94232358..94234196-chr11:94243967..94245668,2	K562	blood:
6	chr11:94150497..94152449-chr11:94231090..94232947,2	K562	blood:

Variant related genes	Relation type
ENSG00000020922	Chromatin interaction
ENSG00000168876	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1009455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1009456	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1061956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020811	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020814	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020817	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020818	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020819	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020820	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020822	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828153	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273755	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285227	1.00[ASN][1000 genomes]
rs12285522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1270117	1.00[ASN][1000 genomes]
rs12708330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12786310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790992	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793645	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12794650	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794843	1.00[ASN][1000 genomes]
rs12795215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796133	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800677	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802057	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805023	1.00[ASN][1000 genomes]
rs12805587	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806594	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924595	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924608	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023718	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34132851	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34159027	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34336989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34394615	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34512155	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34558505	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34680397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34704592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731173	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34789107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34900271	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34936424	1.00[ASN][1000 genomes]
rs34976180	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029646	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35079690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35101429	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203856	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35340764	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35389338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35390767	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35444165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35575568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35661972	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35679802	0.87[EUR][1000 genomes]
rs35753481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35814524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35820823	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35829171	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35931890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046116	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36072739	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36111467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36155619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107508	1.00[EUR][1000 genomes]
rs7126380	1.00[EUR][1000 genomes]
rs71305374	1.00[ASN][1000 genomes]
rs71460618	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71460619	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479607	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479608	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479609	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521529	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521530	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521532	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94227600-94233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:94227600-94234800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:94227800-94232800	Weak transcription	Spleen	Spleen
4	chr11:94227800-94235400	Weak transcription	Pancreas	Pancrea
5	chr11:94227800-94236400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:94227800-94237000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:94227800-94237000	Weak transcription	Aorta	Aorta
8	chr11:94227800-94238400	Weak transcription	Small Intestine	intestine
9	chr11:94227800-94238800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:94227800-94245200	Weak transcription	Gastric	stomach
11	chr11:94228000-94235400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:94228000-94245000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:94228000-94245200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:94228000-94245800	Weak transcription	Stomach Mucosa	stomach
15	chr11:94228400-94245200	Weak transcription	Fetal Stomach	stomach
16	chr11:94228600-94233000	Weak transcription	Brain Germinal Matrix	brain
17	chr11:94228600-94233800	Weak transcription	Fetal Intestine Small	intestine
18	chr11:94228600-94235200	Weak transcription	A549	lung
19	chr11:94229200-94233600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:94229200-94233600	Strong transcription	Dnd41	blood
21	chr11:94229600-94233600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:94229600-94235600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:94229800-94233600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:94229800-94233800	Strong transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:94229800-94234000	Strong transcription	Fetal Thymus	thymus
26	chr11:94229800-94234200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:94229800-94234200	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:94229800-94234200	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr11:94229800-94234400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:94229800-94234400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:94229800-94234600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr11:94229800-94235000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:94229800-94235200	Strong transcription	Liver	Liver
34	chr11:94229800-94235400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr11:94229800-94235400	Strong transcription	Primary T cells from cord blood	blood
36	chr11:94229800-94235400	Strong transcription	Primary hematopoietic stem cells	blood
37	chr11:94229800-94235400	Strong transcription	Placenta	Placenta
38	chr11:94229800-94235600	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr11:94229800-94235600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:94229800-94235600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:94229800-94235600	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:94229800-94236200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:94230000-94232800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr11:94230000-94232800	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:94230000-94233000	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr11:94230000-94233000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr11:94230000-94233400	Strong transcription	Fetal Intestine Large	intestine
48	chr11:94230000-94233600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:94230000-94233600	Strong transcription	Ovary	ovary
50	chr11:94230000-94233600	Strong transcription	HSMM	muscle

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