Variant report

Variant	rs34680397
Chromosome Location	chr11:94131720-94131721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94126870..94128606-chr11:94131595..94133698,2	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1009455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1009456	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1061956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020811	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020814	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020817	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020818	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020819	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020820	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020822	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828153	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273755	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285227	1.00[ASN][1000 genomes]
rs12285522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12786310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790992	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793645	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12794650	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794843	1.00[ASN][1000 genomes]
rs12795215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796133	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800677	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802057	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805023	1.00[ASN][1000 genomes]
rs12805587	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806594	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920263	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924595	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924608	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023718	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34132851	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34159027	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34336989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34394615	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34512155	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34558505	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34704592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34789107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34900271	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34936424	1.00[ASN][1000 genomes]
rs34976180	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029646	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35079690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35101429	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203856	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35340764	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35389338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35390767	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35444165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35575568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35661972	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35679802	0.87[EUR][1000 genomes]
rs35753481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35814524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35820823	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35829171	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35931890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046116	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36072739	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36111467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36155619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107508	1.00[EUR][1000 genomes]
rs7126380	1.00[EUR][1000 genomes]
rs71305374	1.00[ASN][1000 genomes]
rs71460618	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71460619	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479607	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479608	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479609	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521529	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521530	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521532	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94119600-94132400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:94131600-94132000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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