Variant report

Variant	rs12793645
Chromosome Location	chr11:94259591-94259592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94252606..94260040-chr11:94275780..94279036,7	MCF-7	breast:
2	chr11:94259391..94261034-chr11:94261727..94264197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1009455	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1009456	1.00[AMR][1000 genomes]
rs1061956	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10831240	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020790	0.87[EUR][1000 genomes]
rs11020811	1.00[EUR][1000 genomes]
rs11020814	1.00[EUR][1000 genomes]
rs11020817	1.00[EUR][1000 genomes]
rs11020818	1.00[EUR][1000 genomes]
rs11020819	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11020820	1.00[EUR][1000 genomes]
rs11020822	1.00[EUR][1000 genomes]
rs11828153	1.00[EUR][1000 genomes]
rs12273275	0.87[EUR][1000 genomes]
rs12273755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279741	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12284274	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285227	1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs12285522	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs12287908	0.87[EUR][1000 genomes]
rs12292208	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs12708330	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12708331	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs12708332	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12708333	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12708334	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12708335	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12786310	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12788248	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs12788484	0.87[EUR][1000 genomes]
rs12790992	1.00[EUR][1000 genomes]
rs12794650	1.00[EUR][1000 genomes]
rs12795215	0.87[EUR][1000 genomes]
rs12796133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12796917	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12800677	1.00[EUR][1000 genomes]
rs12802057	1.00[EUR][1000 genomes]
rs12805023	0.87[EUR][1000 genomes]
rs12805587	1.00[EUR][1000 genomes]
rs12806594	1.00[EUR][1000 genomes]
rs12807066	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13447612	0.87[EUR][1000 genomes]
rs13447635	0.87[EUR][1000 genomes]
rs13447636	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13447640	0.87[EUR][1000 genomes]
rs13447665	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13447672	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13447713	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13447745	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16920263	0.87[EUR][1000 genomes]
rs16920449	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16920466	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16924595	1.00[EUR][1000 genomes]
rs16924608	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1805360	0.83[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1805365	0.87[EUR][1000 genomes]
rs2005495	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2230273	0.85[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34132851	1.00[EUR][1000 genomes]
rs34159027	1.00[EUR][1000 genomes]
rs34336989	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34394615	1.00[EUR][1000 genomes]
rs34512155	1.00[EUR][1000 genomes]
rs34558505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34680397	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34704592	0.87[EUR][1000 genomes]
rs34731173	0.87[EUR][1000 genomes]
rs34789107	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34900271	1.00[EUR][1000 genomes]
rs34936424	0.86[EUR][1000 genomes]
rs34976180	1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[EUR][1000 genomes]
rs35029646	1.00[EUR][1000 genomes]
rs35079690	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35101429	0.87[EUR][1000 genomes]
rs35203856	1.00[EUR][1000 genomes]
rs35340764	1.00[EUR][1000 genomes]
rs35389338	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35390767	1.00[EUR][1000 genomes]
rs35444165	0.87[EUR][1000 genomes]
rs35575568	0.87[EUR][1000 genomes]
rs35661972	1.00[EUR][1000 genomes]
rs35679802	1.00[EUR][1000 genomes]
rs35753481	0.87[EUR][1000 genomes]
rs35814524	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35820823	1.00[EUR][1000 genomes]
rs35829171	1.00[EUR][1000 genomes]
rs35931890	0.87[EUR][1000 genomes]
rs35971942	0.87[EUR][1000 genomes]
rs36046116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36072739	1.00[EUR][1000 genomes]
rs36111467	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36155619	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7107508	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7116255	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126380	0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71460618	1.00[EUR][1000 genomes]
rs71460619	1.00[EUR][1000 genomes]
rs71477695	0.87[EUR][1000 genomes]
rs71477698	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71479603	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71479604	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71479607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71479608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71479609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73521529	1.00[EUR][1000 genomes]
rs73521530	1.00[EUR][1000 genomes]
rs73521532	1.00[EUR][1000 genomes]
rs7926138	0.83[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs7932572	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7936640	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7944378	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949199	0.87[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94254400-94261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:94257000-94260800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:94257400-94260600	Enhancers	NHEK	skin
5	chr11:94257400-94262400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:94257800-94260200	Enhancers	HMEC	breast
7	chr11:94258400-94260000	Enhancers	Fetal Kidney	kidney
8	chr11:94258800-94260000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:94258800-94260200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:94258800-94260200	Enhancers	Fetal Intestine Small	intestine
11	chr11:94258800-94260200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr11:94258800-94260800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:94258800-94260800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:94259000-94259600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:94259000-94259600	Enhancers	Fetal Heart	heart
16	chr11:94259000-94259600	Enhancers	NH-A	brain
17	chr11:94259000-94260000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:94259000-94260000	Enhancers	Primary hematopoietic stem cells	blood
19	chr11:94259000-94260000	Enhancers	Fetal Lung	lung
20	chr11:94259000-94260200	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr11:94259000-94260200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:94259000-94260200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:94259000-94260400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr11:94259000-94260600	Enhancers	Osteobl	bone
25	chr11:94259000-94262600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:94259200-94259600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:94259200-94259600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:94259200-94259800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:94259200-94260000	Enhancers	Fetal Muscle Leg	muscle
30	chr11:94259200-94260000	Enhancers	Placenta	Placenta
31	chr11:94259200-94260200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr11:94259200-94260400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:94259200-94265400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:94259400-94261000	Enhancers	HSMMtube	muscle

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