Variant report

Variant	rs35814524
Chromosome Location	chr11:94133940-94133941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1009455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1009456	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1061956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020811	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020814	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020817	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020818	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020819	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020820	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020822	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828153	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273755	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285227	1.00[ASN][1000 genomes]
rs12285522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12786310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790992	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793645	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12794650	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794843	1.00[ASN][1000 genomes]
rs12795215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796133	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800677	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802057	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805023	1.00[ASN][1000 genomes]
rs12805587	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806594	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447713	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920449	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924595	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924608	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005495	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023718	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34132851	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34159027	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34336989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34394615	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34512155	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34558505	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34680397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34704592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34789107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34900271	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34936424	1.00[ASN][1000 genomes]
rs34976180	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029646	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35079690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35101429	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203856	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35340764	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35389338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35390767	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35444165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35575568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35661972	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35679802	0.87[EUR][1000 genomes]
rs35753481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35820823	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35829171	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35931890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046116	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36072739	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36111467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36155619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107508	1.00[EUR][1000 genomes]
rs7126380	1.00[EUR][1000 genomes]
rs71305374	1.00[ASN][1000 genomes]
rs71460618	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71460619	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479607	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479608	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479609	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521529	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521530	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521532	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932572	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936640	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94132600-94135200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
2	chr11:94132800-94134800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
3	chr11:94133000-94135000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
4	chr11:94133200-94134000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:94133200-94134200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:94133400-94134000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:94133400-94134000	Bivalent Enhancer	HUVEC	blood vessel
8	chr11:94133400-94135000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
9	chr11:94133600-94134000	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
10	chr11:94133800-94134000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:94133800-94134000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:94133800-94134000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:94133800-94134000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:94133800-94134000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:94133800-94134000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:94133800-94134000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
17	chr11:94133800-94134000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:94133800-94134000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:94133800-94134000	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
20	chr11:94133800-94134000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:94133800-94134000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
22	chr11:94133800-94134000	Bivalent Enhancer	Fetal Heart	heart
23	chr11:94133800-94134000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
24	chr11:94133800-94134000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
25	chr11:94133800-94134000	Bivalent Enhancer	NHEK	skin
26	chr11:94133800-94134200	Bivalent Enhancer	Fetal Brain Male	brain
27	chr11:94133800-94134200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
28	chr11:94133800-94134200	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr11:94133800-94134200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
30	chr11:94133800-94134200	Active TSS	Right Ventricle	heart
31	chr11:94133800-94134200	Enhancers	Spleen	Spleen
32	chr11:94133800-94134400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
33	chr11:94133800-94134400	Bivalent/Poised TSS	Fetal Kidney	kidney
34	chr11:94133800-94134400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
35	chr11:94133800-94134400	Bivalent Enhancer	Stomach Mucosa	stomach
36	chr11:94133800-94134800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
37	chr11:94133800-94134800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
38	chr11:94133800-94134800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:94133800-94134800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
40	chr11:94133800-94134800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
41	chr11:94133800-94134800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
42	chr11:94133800-94135000	Bivalent/Poised TSS	Fetal Brain Female	brain
43	chr11:94133800-94135000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
44	chr11:94133800-94135200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:94133800-94135200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:94133800-94135200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
47	chr11:94133800-94135400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
48	chr11:94133800-94135600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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