Variant report

Variant	rs34336989
Chromosome Location	chr11:94135139-94135140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:94135082-94135262	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
GPR83	TF binding region

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1009455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1009456	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1061956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020811	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020814	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020817	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020818	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020819	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020820	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020822	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828153	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273755	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285227	1.00[ASN][1000 genomes]
rs12285522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12786310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790992	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793645	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12794650	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794843	1.00[ASN][1000 genomes]
rs12795215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796133	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12800677	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802057	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805023	1.00[ASN][1000 genomes]
rs12805587	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806594	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12807066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447640	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13447745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16920466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924595	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924608	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023718	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34132851	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34159027	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34394615	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34512155	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34558505	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34680397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34704592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34731173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34789107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34900271	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34936424	1.00[ASN][1000 genomes]
rs34976180	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029646	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35079690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35101429	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203856	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35340764	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35389338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35390767	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35444165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35575568	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35661972	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35679802	0.87[EUR][1000 genomes]
rs35753481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35814524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35820823	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35829171	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35931890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046116	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36072739	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36111467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36155619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107508	1.00[EUR][1000 genomes]
rs7126380	1.00[EUR][1000 genomes]
rs71305374	1.00[ASN][1000 genomes]
rs71460618	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71460619	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71477698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479607	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479608	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479609	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521529	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521530	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73521532	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926138	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94132600-94135200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
2	chr11:94133800-94135200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:94133800-94135200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:94133800-94135200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
5	chr11:94133800-94135400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr11:94133800-94135600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr11:94134000-94135200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr11:94134000-94135200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:94134000-94135200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr11:94134000-94135200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:94134000-94135200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:94134000-94135200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:94134000-94135200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:94134000-94135200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:94134000-94135200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
16	chr11:94134400-94135600	Bivalent Enhancer	Liver	Liver
17	chr11:94134800-94135200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:94134800-94135200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
19	chr11:94134800-94135400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
20	chr11:94134800-94135400	Flanking Bivalent TSS/Enh	NHEK	skin
21	chr11:94135000-94135200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:94135000-94135200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:94135000-94135200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
24	chr11:94135000-94135200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr11:94135000-94135200	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:94135000-94135200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
27	chr11:94135000-94135200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:94135000-94135200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
29	chr11:94135000-94135200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:94135000-94135200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:94135000-94135200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:94135000-94135200	Bivalent Enhancer	Brain Germinal Matrix	brain
33	chr11:94135000-94135200	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr11:94135000-94135200	Bivalent Enhancer	Colon Smooth Muscle	Colon
35	chr11:94135000-94135200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
36	chr11:94135000-94135200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
37	chr11:94135000-94135200	Bivalent Enhancer	Fetal Intestine Small	intestine
38	chr11:94135000-94135200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
39	chr11:94135000-94135200	Bivalent Enhancer	Fetal Muscle Leg	muscle
40	chr11:94135000-94135200	Enhancers	Placenta	Placenta
41	chr11:94135000-94135200	Bivalent Enhancer	Fetal Stomach	stomach
42	chr11:94135000-94135200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
43	chr11:94135000-94135200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
44	chr11:94135000-94135200	Bivalent Enhancer	HepG2	liver
45	chr11:94135000-94135200	Bivalent Enhancer	HMEC	breast
46	chr11:94135000-94135200	Bivalent Enhancer	HUVEC	blood vessel
47	chr11:94135000-94135400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:94135000-94135600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
49	chr11:94135000-94135800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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