Variant report

Variant	rs10832449
Chromosome Location	chr11:15515397-15515398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15515373..15516180-chr11:15636691..15637625,4	MCF-7	breast:
2	chr11:15515373..15516180-chr11:15636691..15637607,7	MCF-7	breast:
3	chr11:15452166..15452849-chr11:15515237..15515829,2	MCF-7	breast:
4	chr11:15512584..15515913-chr11:15518069..15521001,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10732462	0.82[AFR][1000 genomes]
rs10734235	0.82[AFR][1000 genomes]
rs10766261	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766262	0.98[ASN][1000 genomes]
rs10832448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832451	0.97[ASN][1000 genomes]
rs10832458	0.98[ASN][1000 genomes]
rs10832459	0.98[ASN][1000 genomes]
rs10832473	0.96[YRI][hapmap]
rs4129901	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4756810	0.84[AFR][1000 genomes]
rs6416166	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6486247	0.83[AFR][1000 genomes]
rs6486248	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6486255	0.87[AFR][1000 genomes]
rs7103348	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7107616	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7116074	0.93[AFR][1000 genomes]
rs7117412	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7120823	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7124172	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7124173	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7128205	0.87[AFR][1000 genomes]
rs7129098	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7479920	0.83[AFR][1000 genomes]
rs7480915	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7481721	1.00[ASN][1000 genomes]
rs7483088	1.00[ASN][1000 genomes]
rs7924910	0.95[ASN][1000 genomes]
rs7935111	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7937599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7946452	0.83[AFR][1000 genomes]
rs7947152	0.92[AFR][1000 genomes]
rs7949952	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15512200-15520400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:15514600-15523200	Enhancers	Fetal Intestine Large	intestine
3	chr11:15514800-15516200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:15514800-15516600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:15514800-15520200	Enhancers	Liver	Liver
6	chr11:15514800-15522400	Enhancers	Fetal Intestine Small	intestine
7	chr11:15515200-15515800	Enhancers	Placenta	Placenta
8	chr11:15515200-15516200	Enhancers	Rectal Mucosa Donor 31	rectum

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