Variant report

Variant	rs7949952
Chromosome Location	chr11:15506114-15506115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:15505953-15506201	GM12891	blood:	n/a	chr11:15506049-15506062 chr11:15506056-15506065 chr11:15506050-15506063
2	SPI1	chr11:15505889-15506121	GM12891	blood:	n/a	chr11:15506049-15506062 chr11:15506056-15506065 chr11:15506050-15506063

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15505528..15508330-chr11:15511468..15514048,2	MCF-7	breast:
2	chr11:15505909..15508417-chr11:15510028..15514073,3	K562	blood:

Variant related genes	Relation type
ENSG00000253072	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10766261	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766262	0.95[ASN][1000 genomes]
rs10832448	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832449	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832451	0.95[ASN][1000 genomes]
rs10832458	0.94[ASN][1000 genomes]
rs10832459	0.94[ASN][1000 genomes]
rs10832473	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4129901	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6416166	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6486248	0.96[ASN][1000 genomes]
rs7103348	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7107616	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7117412	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7120823	0.90[ASN][1000 genomes]
rs7124172	0.90[ASN][1000 genomes]
rs7124173	0.90[ASN][1000 genomes]
rs7129098	0.95[ASN][1000 genomes]
rs7480915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481721	0.96[ASN][1000 genomes]
rs7483088	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7924910	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7935111	0.95[ASN][1000 genomes]
rs7937599	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938814	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15504000-15506400	Enhancers	GM12878-XiMat	blood
2	chr11:15505200-15507400	Weak transcription	Liver	Liver
3	chr11:15506000-15506400	Enhancers	Fetal Intestine Small	intestine
4	chr11:15506000-15506600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:15506000-15506600	Enhancers	Fetal Intestine Large	intestine

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