Variant report

Variant	rs4129901
Chromosome Location	chr11:15510045-15510046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15505909..15508417-chr11:15510028..15514073,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10741679	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10766261	0.99[ASN][1000 genomes]
rs10766262	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766265	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10766266	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10766270	0.84[EUR][1000 genomes]
rs10832448	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10832449	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10832451	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832458	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832459	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832473	0.92[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832477	0.84[EUR][1000 genomes]
rs10832478	0.84[EUR][1000 genomes]
rs11023639	0.84[EUR][1000 genomes]
rs2068036	0.86[EUR][1000 genomes]
rs2351041	0.87[EUR][1000 genomes]
rs2351049	0.86[EUR][1000 genomes]
rs2351051	0.84[EUR][1000 genomes]
rs2351052	0.84[EUR][1000 genomes]
rs2351054	0.84[EUR][1000 genomes]
rs2351055	0.84[EUR][1000 genomes]
rs2351056	0.84[EUR][1000 genomes]
rs2351058	0.80[EUR][1000 genomes]
rs2882567	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2882568	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2882569	0.86[EUR][1000 genomes]
rs4757337	0.86[EUR][1000 genomes]
rs6416166	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6486248	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486255	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6486256	0.85[EUR][1000 genomes]
rs6486257	0.84[EUR][1000 genomes]
rs6486258	0.83[EUR][1000 genomes]
rs7103348	0.95[ASN][1000 genomes]
rs7107616	0.98[ASN][1000 genomes]
rs7110995	0.84[EUR][1000 genomes]
rs7114130	0.84[EUR][1000 genomes]
rs7117412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7119351	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7120823	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7122109	0.84[EUR][1000 genomes]
rs7124172	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7124173	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126988	0.86[EUR][1000 genomes]
rs7128205	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7129098	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7480915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7481721	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7483088	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924910	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7930552	0.87[EUR][1000 genomes]
rs7935111	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7936873	0.87[EUR][1000 genomes]
rs7937599	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7938814	0.89[AFR][1000 genomes]
rs7939544	0.86[EUR][1000 genomes]
rs7943582	0.82[EUR][1000 genomes]
rs7949952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809270	chr11:15504338-15528140	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15506600-15510600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:15507600-15514800	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links