Variant report

Variant	rs2351041
Chromosome Location	chr11:15577219-15577220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10741679	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10766262	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10766265	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10766266	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10766270	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10832451	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10832458	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832459	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832473	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832477	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10832478	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10832482	0.85[EUR][1000 genomes]
rs11023639	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1552304	0.84[EUR][1000 genomes]
rs2068036	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2351049	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2351051	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2351052	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2351054	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2351055	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2351056	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2351058	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2882567	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2882568	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2882569	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129901	0.87[EUR][1000 genomes]
rs4757337	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6486248	0.87[EUR][1000 genomes]
rs6486255	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6486256	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6486257	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6486258	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7110995	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7114130	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7117412	0.87[EUR][1000 genomes]
rs7119351	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7120823	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7122109	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7124172	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7124173	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7126988	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7128205	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7129098	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7481721	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7483088	0.93[EUR][1000 genomes]
rs7924910	0.93[EUR][1000 genomes]
rs7930552	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7935111	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7936873	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7939544	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7943582	0.94[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15562800-15581000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:15574000-15591600	Weak transcription	Right Atrium	heart
3	chr11:15574600-15579600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:15574600-15579600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:15574600-15582000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:15574800-15577400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:15574800-15579600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:15575000-15577800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:15575600-15577400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:15576000-15577400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr11:15576000-15579000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:15576600-15577400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr11:15576800-15577400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:15577000-15577600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:15577000-15579200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:15577200-15578000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:15577200-15579000	Weak transcription	Fetal Lung	lung
18	chr11:15577200-15579400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:15577200-15580000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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