Variant report

Variant	rs6486257
Chromosome Location	chr11:15591103-15591104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10741679	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[EUR][1000 genomes]
rs10766262	0.84[EUR][1000 genomes]
rs10766265	0.96[EUR][1000 genomes]
rs10766266	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10766270	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832451	0.82[EUR][1000 genomes]
rs10832458	0.84[EUR][1000 genomes]
rs10832459	0.84[EUR][1000 genomes]
rs10832473	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10832477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832482	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552304	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2068036	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351041	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2351049	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351052	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351055	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351056	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351058	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2882567	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2882568	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2882569	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4129901	0.84[EUR][1000 genomes]
rs4757337	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486248	0.84[EUR][1000 genomes]
rs6486255	0.95[EUR][1000 genomes]
rs6486256	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6486258	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7110995	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117412	0.84[EUR][1000 genomes]
rs7119351	0.96[EUR][1000 genomes]
rs7120823	0.85[EUR][1000 genomes]
rs7122109	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124172	0.85[EUR][1000 genomes]
rs7124173	0.85[EUR][1000 genomes]
rs7126988	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7128205	0.96[EUR][1000 genomes]
rs7129098	0.84[EUR][1000 genomes]
rs7481721	0.84[EUR][1000 genomes]
rs7483088	0.90[EUR][1000 genomes]
rs7924910	0.90[EUR][1000 genomes]
rs7930552	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7935111	0.84[EUR][1000 genomes]
rs7936873	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7939544	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7943582	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15574000-15591600	Weak transcription	Right Atrium	heart
2	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:15588200-15606000	Weak transcription	Left Ventricle	heart
4	chr11:15588400-15593800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:15589600-15592000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:15589600-15592800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:15590400-15591200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:15590800-15591400	Enhancers	Fetal Lung	lung
9	chr11:15590800-15591600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:15590800-15592200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:15591000-15591200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:15591000-15591400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:15591000-15591400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:15591000-15591400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:15591000-15591400	Enhancers	Fetal Brain Female	brain
16	chr11:15591000-15591800	Enhancers	Fetal Stomach	stomach
17	chr11:15591000-15591800	Enhancers	Psoas Muscle	Psoas
18	chr11:15591000-15592000	Enhancers	Fetal Muscle Leg	muscle

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