Variant report

Variant	rs7939544
Chromosome Location	chr11:15588144-15588145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10741679	0.92[EUR][1000 genomes]
rs10766262	0.86[EUR][1000 genomes]
rs10766265	0.97[EUR][1000 genomes]
rs10766266	0.97[EUR][1000 genomes]
rs10766270	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832451	0.84[EUR][1000 genomes]
rs10832458	0.86[EUR][1000 genomes]
rs10832459	0.86[EUR][1000 genomes]
rs10832473	0.97[EUR][1000 genomes]
rs10832477	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832478	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832482	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023639	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1552304	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2068036	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351041	0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2351049	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2351051	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351052	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351054	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351055	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351056	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2351058	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2882567	0.97[EUR][1000 genomes]
rs2882568	0.97[EUR][1000 genomes]
rs2882569	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4129901	0.86[EUR][1000 genomes]
rs4757337	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486248	0.86[EUR][1000 genomes]
rs6486255	0.97[EUR][1000 genomes]
rs6486256	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6486257	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486258	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7110995	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7114130	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117412	0.86[EUR][1000 genomes]
rs7119351	0.97[EUR][1000 genomes]
rs7120823	0.86[EUR][1000 genomes]
rs7122109	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7124172	0.86[EUR][1000 genomes]
rs7124173	0.86[EUR][1000 genomes]
rs7126988	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7128205	0.97[EUR][1000 genomes]
rs7129098	0.86[EUR][1000 genomes]
rs7481721	0.86[EUR][1000 genomes]
rs7483088	0.92[EUR][1000 genomes]
rs7924910	0.92[EUR][1000 genomes]
rs7930552	0.86[AFR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7935111	0.86[EUR][1000 genomes]
rs7936873	0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7943582	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15574000-15591600	Weak transcription	Right Atrium	heart
2	chr11:15581800-15591000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:15585000-15590800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:15586400-15588800	Enhancers	Brain Germinal Matrix	brain
6	chr11:15586600-15588600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:15587000-15588400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr11:15587200-15588600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:15587800-15588200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:15587800-15588200	Enhancers	Fetal Muscle Leg	muscle
11	chr11:15587800-15588200	Enhancers	Left Ventricle	heart
12	chr11:15587800-15588200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:15587800-15588400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:15588000-15588200	Enhancers	Lung	lung

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