Variant report

Variant	rs7943582
Chromosome Location	chr11:15608857-15608858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10741679	0.88[EUR][1000 genomes]
rs10766262	0.82[EUR][1000 genomes]
rs10766265	0.93[EUR][1000 genomes]
rs10766266	0.93[EUR][1000 genomes]
rs10766270	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832458	0.82[EUR][1000 genomes]
rs10832459	0.82[EUR][1000 genomes]
rs10832473	0.93[EUR][1000 genomes]
rs10832477	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832478	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832482	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11023639	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1552304	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2068036	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2351041	0.94[EUR][1000 genomes]
rs2351049	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2351051	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2351052	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2351054	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2351055	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2351056	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2351058	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2882567	0.93[EUR][1000 genomes]
rs2882568	0.93[EUR][1000 genomes]
rs2882569	0.94[EUR][1000 genomes]
rs4129901	0.82[EUR][1000 genomes]
rs4757337	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6486248	0.82[EUR][1000 genomes]
rs6486255	0.93[EUR][1000 genomes]
rs6486256	0.94[EUR][1000 genomes]
rs6486257	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6486258	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7110995	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7114130	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7117412	0.82[EUR][1000 genomes]
rs7119351	0.93[EUR][1000 genomes]
rs7120823	0.82[EUR][1000 genomes]
rs7122109	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7124172	0.82[EUR][1000 genomes]
rs7124173	0.82[EUR][1000 genomes]
rs7126988	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7128205	0.93[EUR][1000 genomes]
rs7129098	0.82[EUR][1000 genomes]
rs7481721	0.82[EUR][1000 genomes]
rs7483088	0.88[EUR][1000 genomes]
rs7924910	0.88[EUR][1000 genomes]
rs7930552	0.94[EUR][1000 genomes]
rs7935111	0.82[EUR][1000 genomes]
rs7936873	0.94[EUR][1000 genomes]
rs7939544	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050475	chr11:15584061-15620602	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15585200-15610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15604200-15618400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:15606200-15611800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:15606400-15610800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:15606600-15611600	Weak transcription	Right Ventricle	heart
6	chr11:15606800-15616000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:15607600-15609000	Enhancers	Psoas Muscle	Psoas
8	chr11:15607800-15612400	Weak transcription	Fetal Intestine Large	intestine
9	chr11:15608000-15612400	Weak transcription	Fetal Intestine Small	intestine
10	chr11:15608600-15611800	Weak transcription	Left Ventricle	heart
11	chr11:15608600-15616200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:15608800-15609000	Enhancers	Right Atrium	heart
13	chr11:15608800-15611600	Weak transcription	Fetal Muscle Leg	muscle

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